Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1036 ATGGAGTCGGAAGCTCTTGCCCCTGAAGTTGACACGTCACAAGAAGAGACATCAAGAAAGAGGTCTTGTCCAAGTAAAAAGAACCAAGGGAAAGTCCCCAAGAGAGTTCACAAGGCTGAAAGAGAGAAATTGAAGCGTGAACATTTGAATGAACTCTTTCTTGGTCTTGCTGATACACTAGAGGTAACAGACCTCAATGAACAGAGCAATGGAAAAGCTTCTACTTTGAAGGAAGCCACCAGATTTCTGAAAGACTTGTTCAGTCAGATCGAGTCCCTGAAAAAGGATAGTACATCTCTGTTATCTGAAGCTCATTATGTGACAATGGAGAAAACTGAGATGGTGGAGGAGAATTCTTCTCTAAAAATTCAAATTGAGAAGCTTCAAGATGAGATAAAAGCAAGAGTACTAGCCCAATCTAAACCTGACTTGATGAATGCACCTTTTCATTTGGAACTTGAGCAACAAGAAAAGTTCACAGGAGAGAGTCTCCAATCGTCTACCACAGAACCTACATTGCAGCAAGGACATGCAGTTTTTGTTGTCCCCTTAAGTCATCATCACCAAGATGCTTTTTCAGCTCATAATGTTGCTGAGGTGATTCCAAACCCCACCTCTAGTACTATCAAAATTTGGAATCTAGGTGATACTGTGATAGTAATTGGTGATTAG 672 0.4077 MESEALAPEVDTSQEETSRKRSCPSKKNQGKVPKRVHKAEREKLKREHLNELFLGLADTLEVTDLNEQSNGKASTLKEATRFLKDLFSQIESLKKDSTSLLSEAHYVTMEKTEMVEENSSLKIQIEKLQDEIKARVLAQSKPDLMNAPFHLELEQQEKFTGESLQSSTTEPTLQQGHAVFVVPLSHHHQDAFSAHNVAEVIPNPTSSTIKIWNLGDTVIVIGD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1036 223 PANTHER TRANSCRIPTION FACTOR BHLH47 7 198 - -
Aed10g1036 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 86 IPR011598 GO:0046983
Aed10g1036 223 Pfam Helix-loop-helix DNA-binding domain 34 86 IPR011598 GO:0046983
Aed10g1036 223 MobiDBLite consensus disorder prediction 1 42 - -
Aed10g1036 223 PANTHER TRANSCRIPTION FACTOR BHLH47 7 198 - -
Aed10g1036 223 Coils Coil 76 96 - -
Aed10g1036 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 109 IPR036638 GO:0046983
Aed10g1036 223 Gene3D - 33 114 IPR036638 GO:0046983
Aed10g1036 223 Coils Coil 111 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1036 Aed-Chr10 9147024 9149518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1036 29 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 65.833 5.05e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g1036 HLH 7.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1036 - - vun:114176257 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1036 10 9147024 9149518 Aed6g1566 6 19733718 19737263 ECH
Aed10g1036 10 9147024 9149518 Aed10g1036 10 9147024 9149518 ECH