Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1026 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACTGATGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCTGAGATTCGCGAGAGGCGCTCTGACAAGGTTTCAGCATCGAAGGTGTTGCAAGACACATGCAACTACATAAGAAGCTTACACAGGGAAGTGGATGACCTAAGCGAGCGTTTATCTGAGCTCTTGGCTACAACTGACACGGCACAAGCTGCAATTATTAGAAATTTACTAATGCAATAG 279 0.4444 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRERRSDKVSASKVLQDTCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1026 92 Coils Coil 57 77 - -
Aed10g1026 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Aed10g1026 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Aed10g1026 92 Gene3D - 18 88 IPR036638 GO:0046983
Aed10g1026 92 MobiDBLite consensus disorder prediction 1 20 - -
Aed10g1026 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Aed10g1026 92 CDD bHLH_AtPRE_like 17 77 - -
Aed10g1026 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Aed10g1026 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1026 Aed-Chr10 9028782 9030646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1026 17 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 80.519 5.83e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g1026 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1026 - - gmx:100527636 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0399 3 2866807 2868188 Aed10g1026 10 9028782 9030646 ECH
Aed11g0332 11 2715677 2717155 Aed10g1026 10 9028782 9030646 ECH
Aed10g1026 10 9028782 9030646 Aed10g1026 10 9028782 9030646 ECH