Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1023 ATGTCGACTCCGGCTGGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAACATGACCCGCCTGCAGGGATCAGTGGTGCCCCAAAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGTCCTGATGACACTCCATGGGATGGAGTTTATGCTGATGGAAGTATCTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTGGCTGCTATACTTACATCTATCCAGTCATTGCTGTGTGATCCCAACCCAAATTCTCCTGCAAACTCTGAAGCGGCTCGAATGTTCAATGAGAACAAGCGTGAGTATAATCGAAGAGTGAGGGAAAGAATTGATGTAAGATTTGAGAACAAAAGCTTCCACGTTTATCAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTGCTTCCAACGAGTTTGAAAATGGTTTGTCCTTAGATCCAACCCCCAATGAATTTGCTACAAATGAGGAAGACCTTGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGAGAATCAAGAAAGAGAGATTATTGGATCTGTTGACCCAGATGCACCCCCTGATCCAGAGAAAATTAGACAGGAGGAAGCAGCAACGAAGGCACAAGCTGCTTTCAGGGTTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGTTGGATTTGAAATCCAAGAGAAGTGCAATCTATTTAAGCCTCTGGATGGAAAACTTGGTGAGCCAGTTGGCATCTCCACGAAAATTTCCAAGCTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAAGTACGATAATGGCCCTGCGCCTGCAATATGTTAGTGGAGATCCAAATTCAGTCTTAAGCTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAGCCAGTTCCCCGACCCAAGAAAATTCGAGACACTAAATCTCAGAGAAAGCATGGTAATATTTCAAATGGCGAAGCTCAAATTACCAAGTCAAAGCGCACTACCAGGAAGCTTCCTGTTGCAAATTCTGAACCATCCCCGGTGCAAACACATCCTGAAGTTGAGAAACCAAAACGTAATTTCAGGAAAATACCACACCAAGTGTCAGATCCAGAGCAAGAAAATCCCCAAAGTGAGCTTGAAAAAGTCAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGCTGTTCAGCCAGAAGTTGAATGTGAGACCCCAAAGCAGCATTTTGAAATGGCAACAGCTATTCCAAGTCACGCCGTTTCAGAACAAGTGGTCATAACTTCTGATGAAAAGATAAAAAAGGAAGCAATTTTGAACATCTCCAATGTACCTGAAGTGGAAATTACACCAACGCTATCAGTTAACAAGGAGGTGTTTGACATTCCAAACAGTTATCAAGTGTCAGTAGAATCAAAGCCCTTGGAAGAGACTCCAACTAAAGATAGAAATACTTCTCATGATGAAGTTGAAAATGCGCCGGGCAATCTACCAGAGATTATTTTCAAAGATGAAAATTCCCTGTTACCAAATGGAGATTTGAGTCACAAAGAAGAGGTAACAGTTAATGAAAACCGAAAGCCTATTCGGAAAGCCTCAAATATGGCAAAGCAGGAGAATGGAGAAGAGGGCTTAAAGAATAGTCCAAAACTACCAAGTTATATGGCTGCTACCGAATCTGCCAAGGCAAAGTTGAGAGCACAAGGATCACCAAGGCTTGAAGAAGATGAAATTGAGAAAAACAACACCGCTGGTTCTGGGAGACATTCTCTTCCATCTTCAACTAACAAGAAGATTAGTTCACATTCACCTAAGAAACAGAGATCAGTTCCAGCAGGTGGCAAAGGGGGCAACAAAAGTGACAAACCATCTTCTAAAGGAGCAAATGGGAAGGTAATTCAAGCGGAGTGGAAGAGGTCCGTAGTGGAGGATAGATCATATTGTTAA 1968 0.4197 MSTPAGKRLMRDFKRLQHDPPAGISGAPKDNNIMLWNAVIFGPDDTPWDGVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFNENKREYNRRVRERIDVRFENKSFHVYQKFVNKKEAVVASNEFENGLSLDPTPNEFATNEEDLELENEESENILPENQEREIIGSVDPDAPPDPEKIRQEEAATKAQAAFRVVKLQALVRGGRIRQSNVGFEIQEKCNLFKPLDGKLGEPVGISTKISKLSANTFIRKLLASSSTIMALRLQYVSGDPNSVLSWLERWSASYFWKPVPRPKKIRDTKSQRKHGNISNGEAQITKSKRTTRKLPVANSEPSPVQTHPEVEKPKRNFRKIPHQVSDPEQENPQSELEKVKRNLRKIHNPVVENAAVQPEVECETPKQHFEMATAIPSHAVSEQVVITSDEKIKKEAILNISNVPEVEITPTLSVNKEVFDIPNSYQVSVESKPLEETPTKDRNTSHDEVENAPGNLPEIIFKDENSLLPNGDLSHKEEVTVNENRKPIRKASNMAKQENGEEGLKNSPKLPSYMAATESAKAKLRAQGSPRLEEDEIEKNNTAGSGRHSLPSSTNKKISSHSPKKQRSVPAGGKGGNKSDKPSSKGANGKVIQAEWKRSVVEDRSYC 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1023 655 PANTHER IQ-DOMAIN 5-RELATED 212 634 - -
Aed10g1023 655 PANTHER IQ-DOMAIN 5-RELATED 129 211 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 591 607 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 477 655 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 166 198 - -
Aed10g1023 655 SMART ubc_7 7 120 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 482 496 - -
Aed10g1023 655 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 120 IPR000608 -
Aed10g1023 655 MobiDBLite consensus disorder prediction 524 544 - -
Aed10g1023 655 Pfam Protein of unknown function (DUF4005) 545 627 IPR025064 -
Aed10g1023 655 Pfam Ubiquitin-conjugating enzyme 51 113 IPR000608 -
Aed10g1023 655 CDD UBCc 7 113 IPR000608 -
Aed10g1023 655 MobiDBLite consensus disorder prediction 355 383 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 575 590 - -
Aed10g1023 655 SUPERFAMILY UBC-like 1 114 IPR016135 -
Aed10g1023 655 PANTHER PROTEIN IQ-DOMAIN 31 212 634 - -
Aed10g1023 655 PANTHER PROTEIN IQ-DOMAIN 31 129 211 - -
Aed10g1023 655 MobiDBLite consensus disorder prediction 312 383 - -
Aed10g1023 655 Gene3D Ubiquitin Conjugating Enzyme 52 127 IPR016135 -
Aed10g1023 655 MobiDBLite consensus disorder prediction 323 353 - -
Aed10g1023 655 Gene3D Ubiquitin Conjugating Enzyme 1 51 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1023 Aed-Chr10 8983819 8997740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1023 128 646 IQD Protein Family AT1G74690 37.879 1.99e-77 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1023 - - gmx:100786022 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1023 10 8983819 8997740 Aed6g1557 6 19674610 19681490 ECH
Aed11g0324 11 2610643 2616037 Aed10g1023 10 8983819 8997740 ECH
Aed10g1023 10 8983819 8997740 Aed10g1023 10 8983819 8997740 ECH