Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1021 ATGGAAACTACCAATAAGTTCAGTTTGCTATTCTTTTATGGAATTTGTCTTGCTATATTCCCCACCCTTATGGCAAACATAGATCAGTTCGATCATGTCTGGCATAGGCGATTAACGGAAGCAAGGGAAGCTGCAAAACAAGCTTACCACCCCGACCCCATGAAAGTTACATCTGAATTCAATGAACACGTCATCAGGGCAACGAGATGGTCCAACGGCACAAGAAGGAGTTTATCAAGTTCAGGTTCATGCAAGGCAACAAATCCCGTTGACCAATGTTGGAGATGCGACCCCAATTGGGAGAAAAACCGCATGAAGCTAGCAGATTGTGCCCTAGGGTTTGGCCACGGCACAACCGGGGGCAAAGGTGGAAAAATTTACGTGGTGGTGGACAACTCCGACAATGACCTCGTGAATCCTAAACCAGGAACATTGAGACACGCGGTGCTTCAGAAAGGGCCACTGTGGATCATTTTCAAGAAAAACATGCGCATCAAACTCAAGGCTGAGCTTATGTTAACGAATGACAAGACCATCGATGCTCGCGGCGCCAATGTGCACATTCAAGATGGTGCCCAGATAACGTTGCAGTATGTGAAAAACATCATAATCCACGGCCTTCACATTCACGACATTAAGAAAACCAACGGTGGCCTTATAAGAGACTCCTTGGATCACTACGGTAACCGCCAAGCGAGTGATGGTGATGGCATCGTGGTCTTCGGATCCACACATGTTTGGATTGATCATGTTTCCATGACCAACTGCGCCGACGGCCTCATCGATGTCGTCGCCGCTTCAACCGCTGTTACCATCACAAACTGTCATTTTACCAAACATAACGACGTTTTGTTATTTGGTGCGAGTGATACCTTCTCAGGAGATAAAATCATGCAAGTGACATTGGCTTTCAACCATTTCGGAAGAGGATTGGTTCAGAGGATGCCAAGGTGCAGATGGGGATTCTGTCATGTTGTTAACAATGACTACACTCAGTGGCTAATGTACGCCATAGGTGGTAGCAAAAACCCCACCATCATCAGCCAGGGCAACCGGTTTTTCGCTCCCTATGACCGAAATGCAAAAGAAGTTCGTATTGTGACAAAAAGGGACTATGTATCAAAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGTGATGTGTTCATGAATGGAGCCTTCTTTGTTGAGTCTGGGAAAGACGTTCAAGAACATCCCAAGGCAGAAATCAAAGCAAAGCCTGGGACATACGTGGAGGAACTCACTCGCTTTGCAGGTCCTCTAAAATGTGTACCAAATAAGCCCTGTTGA 1314 0.4619 METTNKFSLLFFYGICLAIFPTLMANIDQFDHVWHRRLTEAREAAKQAYHPDPMKVTSEFNEHVIRATRWSNGTRRSLSSSGSCKATNPVDQCWRCDPNWEKNRMKLADCALGFGHGTTGGKGGKIYVVVDNSDNDLVNPKPGTLRHAVLQKGPLWIIFKKNMRIKLKAELMLTNDKTIDARGANVHIQDGAQITLQYVKNIIIHGLHIHDIKKTNGGLIRDSLDHYGNRQASDGDGIVVFGSTHVWIDHVSMTNCADGLIDVVAASTAVTITNCHFTKHNDVLLFGASDTFSGDKIMQVTLAFNHFGRGLVQRMPRCRWGFCHVVNNDYTQWLMYAIGGSKNPTIISQGNRFFAPYDRNAKEVRIVTKRDYVSKSEWKNWNWRSEGDVFMNGAFFVESGKDVQEHPKAEIKAKPGTYVEELTRFAGPLKCVPNKPC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1021 437 Pfam Pectate lyase, N terminus 26 78 IPR007524 GO:0030570
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Aed10g1021 437 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Aed10g1021 437 Gene3D - 87 430 IPR012334 -
Aed10g1021 437 Pfam Pectate lyase 177 353 IPR002022 -
Aed10g1021 437 PANTHER PECTATE LYASE 8 437 - -
Aed10g1021 437 SMART amb_all 162 359 IPR002022 -
Aed10g1021 437 SUPERFAMILY Pectin lyase-like 88 420 IPR011050 -
Aed10g1021 437 PANTHER PECTATE LYASE 18-RELATED 8 437 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1021 Aed-Chr10 8958239 8960135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1021 1 437 Polysaccharide Lyase AT3G01270 53.027 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1021 K01728 - gmx:100801864 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0421 3 2998769 3001437 Aed10g1021 10 8958239 8960135 ECH
Aed10g1021 10 8958239 8960135 Aed10g1021 10 8958239 8960135 ECH