Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1012 ATGGGCATGGACTACTACAACATACTCAAAGTGAATCGCAACGCCAGCGAAGACGATTTGAAGAAAGCCTATAAGCGACTCGCGCGTATATGGCACCCCGACAAGAACCCCGTGAACAAGAGCGAAGCCGAGGCCAAGTTCAAACGAATCTCCGAAGCCTATGATGTCCTCAGCGACTCGCAGAAGCGCCAGATCTACGATCTTTACGGCGAGGAGGCGCTCAAATCAGGGCAGTTTCCGCCGCCGCCGCAGTCCTCGTCTTCCTCCTCGTCGTCGCGCGCCTTCCACAACCACAACCACCACCGCCAGAACAACCACCCTCCGCCGCCGGCCGCATCGTTCCGGTTCAACCCGCGCGACGCCGAAGACATCTACGCCGAGCTTTTTGGCGCGGACGACATCGCCGCCGGCACCTCGAACCGCCGGGGTGGAGTCGGCCCCGACTCCTTCTTCCGGGCCTCCAACGGCGGCGCGTTTGTCCCCCCGGCCCCCGCTAGGAAGGCCGCCGCGGTGGAGAACGCGCTCCTGTGCAGCTTGGAGGACCTCTACAAAGGCGTCAAGAAGAAGATGAAGATTTCCAGGAACGTCTGCGACGCTTTTGGCAAATCTCGGAATGTGGAGGAGATATTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGAGCCTGGTGTCATCCCAGCAGATCTTATTTTTGTGGTAGATGAGAAACCGCATGCTCTTTATAGAAGAGATGGTAATGATTTGGTGATCAACCAAGAGATAACCCTTCTTGAGGCCCTTACAGGTAAAACGTTGGATCTCACCACCTTGGATGGAAGGAGTATCATGATCCCATTGGCAGATATTGTCAAACCCGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCTATATCAAAAGAGCCTGGGAAGAAGGGGAATTTGAGAATTAAGCTTGATGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAGAAGTCCGATCTGAGGAGAGTTCTAGGTGGAATCTCATAA 1047 0.5387 MGMDYYNILKVNRNASEDDLKKAYKRLARIWHPDKNPVNKSEAEAKFKRISEAYDVLSDSQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSRAFHNHNHHRQNNHPPPPAASFRFNPRDAEDIYAELFGADDIAAGTSNRRGGVGPDSFFRASNGGAFVPPAPARKAAAVENALLCSLEDLYKGVKKKMKISRNVCDAFGKSRNVEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADLIFVVDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSIMIPLADIVKPGAEVVVPNEGMPISKEPGKKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGIS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1012 348 CDD DnaJ_C 177 332 - -
Aed10g1012 348 SMART dnaj_3 3 62 IPR001623 -
Aed10g1012 348 MobiDBLite consensus disorder prediction 74 116 - -
Aed10g1012 348 Gene3D - 250 330 - -
Aed10g1012 348 Pfam DnaJ domain 4 67 IPR001623 -
Aed10g1012 348 Gene3D - 169 248 - -
Aed10g1012 348 CDD DnaJ 4 59 IPR001623 -
Aed10g1012 348 PANTHER BNAA06G20720D PROTEIN 2 347 - -
Aed10g1012 348 PRINTS DnaJ domain signature 24 39 IPR001623 -
Aed10g1012 348 PRINTS DnaJ domain signature 42 62 IPR001623 -
Aed10g1012 348 PRINTS DnaJ domain signature 6 24 IPR001623 -
Aed10g1012 348 PRINTS DnaJ domain signature 62 81 IPR001623 -
Aed10g1012 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 338 IPR008971 GO:0006457|GO:0051082
Aed10g1012 348 SUPERFAMILY Chaperone J-domain 3 85 IPR036869 -
Aed10g1012 348 Gene3D DnaJ domain 2 139 IPR036869 -
Aed10g1012 348 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Aed10g1012 348 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Aed10g1012 348 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 347 - -
Aed10g1012 348 MobiDBLite consensus disorder prediction 79 94 - -
Aed10g1012 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 175 250 IPR008971 GO:0006457|GO:0051082
Aed10g1012 348 Pfam DnaJ C terminal domain 174 329 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1012 Aed-Chr10 8888841 8892897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1012 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 1.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1012 K09510 - gmx:100781572 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1012 10 8888841 8892897 Aed10g1012 10 8888841 8892897 ECH