Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0999 ATGGATCCTCCTCTCATCAGAGACTCCACATTCTTCCCCGCTTTCACCCTCGCCGAGATTTGGCCCGGAGTGCCCCACTCCGATCACTCCTCCCTCACTGCCGACCAACCCCGCAAGAGAAAGGACCATCACCACTCCACCACTCCCAACCTATCCAATAATGATTCTGGTAGTAGCATTAAACGGATGAAGGTAGGAGGGTCCAGCGTTGAAAACGATGGTTTGAAAGCTGAGGCAGAAGCAAGTTCTGTGGGTGGCAACAAGTCAAGTGAACAAAGCACTAAAACTTGTGAGGCACCAAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAGTTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGATGAGATAATCAATTATATCCAATCGCTGCAGCGTCAGTTCCTTTCAATGAAGCTTGAATCAGTTAATTCAAGAATGACGATGAACCCTACCATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCGTTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGAATGCTCAGGGATCACTTCCTGGATGGCTGCATATGCAGATTGGTGGTGGTTTTGACAGAACAACATGA 705 0.4695 MDPPLIRDSTFFPAFTLAEIWPGVPHSDHSSLTADQPRKRKDHHHSTTPNLSNNDSGSSIKRMKVGGSSVENDGLKAEAEASSVGGNKSSEQSTKTCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLESVNSRMTMNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGNAQGSLPGWLHMQIGGGFDRTT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0999 234 MobiDBLite consensus disorder prediction 32 48 - -
Aed10g0999 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 178 IPR036638 GO:0046983
Aed10g0999 234 CDD bHLH_AtBPE_like 103 186 - -
Aed10g0999 234 SMART finulus 119 169 IPR011598 GO:0046983
Aed10g0999 234 PANTHER BNAC05G07950D PROTEIN 34 234 - -
Aed10g0999 234 MobiDBLite consensus disorder prediction 49 65 - -
Aed10g0999 234 Pfam Helix-loop-helix DNA-binding domain 117 164 IPR011598 GO:0046983
Aed10g0999 234 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 34 234 IPR024097 GO:0006355
Aed10g0999 234 MobiDBLite consensus disorder prediction 83 98 - -
Aed10g0999 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 163 IPR011598 GO:0046983
Aed10g0999 234 MobiDBLite consensus disorder prediction 23 98 - -
Aed10g0999 234 Gene3D - 110 184 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0999 Aed-Chr10 8759954 8764283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0999 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 44.912 3.10e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0999 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0999 - - gmx:100306638 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0999 10 8759954 8764283 Aed6g1512 6 19351731 19354171 ECH
Aed10g0999 10 8759954 8764283 Aed10g0999 10 8759954 8764283 ECH