Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed10g0984 | ATGTCTTCTTTGTCAACGCACCACACATATAGCCGAAAGCAAAAATCTCTCGGCCTCCTCTGCACCAATTTTCTAAGTTTGTACAACAAAGAAAGCGTGCGGTTAATCGGTCTTGATGACGCTGCTTCGAGATTAGGGGTCGAACGAAGACGGATCTACGACATAGTTAATGTTTTAGAGAGTGTCGGAGTTCTCTCCAGAAGAGCTAAGAATCAATATACATGGAAAGGGTTTTCAGCTATCCCTGCTGCTCTGCAAGAGCTTAAGGATGATGGTTTAAAGGAGAATCCTGGATCTCTTGATGACTCCAATGACAGTGCAAAACTGTCTGACGATGAGGACGAAGAAGAAACATTTTCCAATGTTAACACTGGAAGTCAGAGTGAGAAAGAAAATCCTTCTCAGGAGGACCCTGATTCCACCGCAACTGTGAAATCCTCCAAGAACGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGAAGAAGCTGCTAAGTTGTTGCTTGGAAATTCCCATAATAGAACAAAAGTCAGACGCCTATATGATATTGCGAATGTGTTATCCTCCATGAACCTAATTGAGAAGACCCATACTAAAAACACAAGAAAACCAGCATTCAAGTGGTTGGGTGTGAGAGGGAAAACATGGAGTGAATCAGTTGACTTAGCCCACAATTCAAATGTTGAAGAGTCAAAGAAAAGGATGTTTGGAACTGATATGACAAACATAAGTTTTAAAAGGAACAAAGTTGATTTGTCCATGGATGGCCAGAGCTCTAAAATGCAAAACCAAGACGAAAATAATAGTCCCAGAGCTCACTTTGAAAGATCTATTCTCACACTACATGGAGGCATGGAAATCTTGGTACTCTGA | 927 | 0.4078 | MSSLSTHHTYSRKQKSLGLLCTNFLSLYNKESVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRRAKNQYTWKGFSAIPAALQELKDDGLKENPGSLDDSNDSAKLSDDEDEEETFSNVNTGSQSEKENPSQEDPDSTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMISLEEAAKLLLGNSHNRTKVRRLYDIANVLSSMNLIEKTHTKNTRKPAFKWLGVRGKTWSESVDLAHNSNVEESKKRMFGTDMTNISFKRNKVDLSMDGQSSKMQNQDENNSPRAHFERSILTLHGGMEILVL | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed10g0984 | 308 | Gene3D | - | 7 | 79 | IPR036388 | - | |
Aed10g0984 | 308 | Gene3D | - | 146 | 230 | IPR036388 | - | |
Aed10g0984 | 308 | PANTHER | TRANSCRIPTION FACTOR E2F | 5 | 285 | IPR015633 | GO:0000978|GO:0006357 | |
Aed10g0984 | 308 | MobiDBLite | consensus disorder prediction | 92 | 152 | - | - | |
Aed10g0984 | 308 | SUPERFAMILY | "Winged helix" DNA-binding domain | 151 | 217 | IPR036390 | - | |
Aed10g0984 | 308 | SMART | E2F_TDP_2 | 152 | 228 | IPR003316 | GO:0005667|GO:0006355 | |
Aed10g0984 | 308 | SMART | E2F_TDP_2 | 12 | 77 | IPR003316 | GO:0005667|GO:0006355 | |
Aed10g0984 | 308 | MobiDBLite | consensus disorder prediction | 120 | 145 | - | - | |
Aed10g0984 | 308 | Pfam | E2F/DP family winged-helix DNA-binding domain | 13 | 77 | IPR003316 | GO:0005667|GO:0006355 | |
Aed10g0984 | 308 | Pfam | E2F/DP family winged-helix DNA-binding domain | 154 | 228 | IPR003316 | GO:0005667|GO:0006355 | |
Aed10g0984 | 308 | SUPERFAMILY | "Winged helix" DNA-binding domain | 11 | 75 | IPR036390 | - | |
Aed10g0984 | 308 | PANTHER | E2F TRANSCRIPTION FACTOR-LIKE E2FF | 5 | 285 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed10g0984 | Aed-Chr10 | 8647998 | 8656105 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed10g0984 | 3 | 265 | E2F-DP Transcription Factor Family | AT3G48160 | 63.197 | 2.67e-103 | 306 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | E2F-DP | Aed10g0984 | E2F_TDP | 8.4e-21 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed10g0984 | K09391 | - | gmx:100818090 | 503.827 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed10g0984 | 10 | 8647998 | 8656105 | Aed10g0984 | 10 | 8647998 | 8656105 | ECH | |
Aed6g1498 | 6 | 19234538 | 19239409 | Aed10g0984 | 10 | 8647998 | 8656105 | PCT |