Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0984 ATGTCTTCTTTGTCAACGCACCACACATATAGCCGAAAGCAAAAATCTCTCGGCCTCCTCTGCACCAATTTTCTAAGTTTGTACAACAAAGAAAGCGTGCGGTTAATCGGTCTTGATGACGCTGCTTCGAGATTAGGGGTCGAACGAAGACGGATCTACGACATAGTTAATGTTTTAGAGAGTGTCGGAGTTCTCTCCAGAAGAGCTAAGAATCAATATACATGGAAAGGGTTTTCAGCTATCCCTGCTGCTCTGCAAGAGCTTAAGGATGATGGTTTAAAGGAGAATCCTGGATCTCTTGATGACTCCAATGACAGTGCAAAACTGTCTGACGATGAGGACGAAGAAGAAACATTTTCCAATGTTAACACTGGAAGTCAGAGTGAGAAAGAAAATCCTTCTCAGGAGGACCCTGATTCCACCGCAACTGTGAAATCCTCCAAGAACGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGAAGAAGCTGCTAAGTTGTTGCTTGGAAATTCCCATAATAGAACAAAAGTCAGACGCCTATATGATATTGCGAATGTGTTATCCTCCATGAACCTAATTGAGAAGACCCATACTAAAAACACAAGAAAACCAGCATTCAAGTGGTTGGGTGTGAGAGGGAAAACATGGAGTGAATCAGTTGACTTAGCCCACAATTCAAATGTTGAAGAGTCAAAGAAAAGGATGTTTGGAACTGATATGACAAACATAAGTTTTAAAAGGAACAAAGTTGATTTGTCCATGGATGGCCAGAGCTCTAAAATGCAAAACCAAGACGAAAATAATAGTCCCAGAGCTCACTTTGAAAGATCTATTCTCACACTACATGGAGGCATGGAAATCTTGGTACTCTGA 927 0.4078 MSSLSTHHTYSRKQKSLGLLCTNFLSLYNKESVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRRAKNQYTWKGFSAIPAALQELKDDGLKENPGSLDDSNDSAKLSDDEDEEETFSNVNTGSQSEKENPSQEDPDSTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMISLEEAAKLLLGNSHNRTKVRRLYDIANVLSSMNLIEKTHTKNTRKPAFKWLGVRGKTWSESVDLAHNSNVEESKKRMFGTDMTNISFKRNKVDLSMDGQSSKMQNQDENNSPRAHFERSILTLHGGMEILVL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0984 308 Gene3D - 7 79 IPR036388 -
Aed10g0984 308 Gene3D - 146 230 IPR036388 -
Aed10g0984 308 PANTHER TRANSCRIPTION FACTOR E2F 5 285 IPR015633 GO:0000978|GO:0006357
Aed10g0984 308 MobiDBLite consensus disorder prediction 92 152 - -
Aed10g0984 308 SUPERFAMILY "Winged helix" DNA-binding domain 151 217 IPR036390 -
Aed10g0984 308 SMART E2F_TDP_2 152 228 IPR003316 GO:0005667|GO:0006355
Aed10g0984 308 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Aed10g0984 308 MobiDBLite consensus disorder prediction 120 145 - -
Aed10g0984 308 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Aed10g0984 308 Pfam E2F/DP family winged-helix DNA-binding domain 154 228 IPR003316 GO:0005667|GO:0006355
Aed10g0984 308 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Aed10g0984 308 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0984 Aed-Chr10 8647998 8656105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0984 3 265 E2F-DP Transcription Factor Family AT3G48160 63.197 2.67e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed10g0984 E2F_TDP 8.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0984 K09391 - gmx:100818090 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0984 10 8647998 8656105 Aed10g0984 10 8647998 8656105 ECH
Aed6g1498 6 19234538 19239409 Aed10g0984 10 8647998 8656105 PCT