Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0972 ATGATGGCATCATCATTTGGTGGAACTACTCAGAAGTGCAAAGCATGTGAGAAGACTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCCTGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAACTATTGTTCATTTGAGGGTGTTTTATACTGTAAGCCTCACTTTGATCAACTCTTCAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCCACTGACCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCACAAGGCTTGTTTCAGGTGCACTCATGGAGGATGTGTAATTAGCCCATCAAATCATGTGGCCCATGAACATCGCCTCTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGACAAGCAAGAAAATAATGAAGAGGTGACTACTGAGAACACAATAACTGAGTAA 585 0.4137 MMASSFGGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNHVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENNEEVTTENTITE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0972 194 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Aed10g0972 194 CDD LIM2_SF3 112 172 - -
Aed10g0972 194 SMART lim_4 111 163 IPR001781 -
Aed10g0972 194 SMART lim_4 12 64 IPR001781 -
Aed10g0972 194 ProSiteProfiles LIM domain profile. 11 71 IPR001781 -
Aed10g0972 194 ProSitePatterns LIM zinc-binding domain signature. 13 47 IPR001781 -
Aed10g0972 194 Gene3D Cysteine Rich Protein 8 77 - -
Aed10g0972 194 Gene3D Cysteine Rich Protein 106 176 - -
Aed10g0972 194 Pfam LIM domain 13 67 IPR001781 -
Aed10g0972 194 Pfam LIM domain 112 167 IPR001781 -
Aed10g0972 194 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 191 - -
Aed10g0972 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 39 79 - -
Aed10g0972 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 137 - -
Aed10g0972 194 CDD LIM1_SF3 9 71 - -
Aed10g0972 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 176 - -
Aed10g0972 194 PANTHER OS06G0237300 PROTEIN 4 191 IPR045268 GO:0051015
Aed10g0972 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0972 Aed-Chr10 8465778 8469464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed10g0972 LIM 6.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0972 K09377 - gmx:100500501 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0972 10 8465778 8469464 Aed10g0972 10 8465778 8469464 ECH
Aed6g1490 6 19171799 19173856 Aed10g0972 10 8465778 8469464 PCT