Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0963 ATGGTGGCCAGGTCATGCTTGAATTTGTTGGATCTGGTATCAGGGGATATGTTAAATTTCCCTCAGACTCCAAGATCTCTTCCGCGAGTTATGACTGATCCAGGAATCATGCCTGATGGAGATGGTAAACAAATTAATGATGATGATTCGAGTGTTTTCTCGTCAGAACACCGTCGCAAGATAATTATAGTATCAAATTCTCTTCCTCTCAATGCAAAAAGGGATAAAACATCTGGCAAATGGTGCTTCAGTTATGACGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTCCTGATGCCGATGTTGTCTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAACGAGCAAGAGAAAGTTTCCCTTCAGTTGCTGGAGGAATTCAATTGCGTGCCTACTTTTATTCCTTCAGCCCTCTACAAACAATTCCATGATGGATTCTGCAAGCAACAATTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCGCCGCTTTGATAGGTCACAGTGGCAGGCTTATCTTTCCGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGAGGACTATGTATGGGTTCATGATTATCATCTTATGGTCCTTCCAACATTTCTGCGGAAGCGGTGTAGTCGAGTCAGGCTTGGTTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAGTTTATAAAACTCTTCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTCCACACCTTTGACTATGCTCGCCATTTTCTATCCTGCTGTAGGCGAATGCTTGGTTTGGAACATGAACCCAAGAGGGGTTACATTGGGTTTGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCAGGGATTCACATGGGTCGACTTCAATCCGCCTTAGATCATCCTTCCTCTTCTAACAAAGTCAGAGAAATCCACCAACAATTTAAGGGGAAAAAGCTTATTGTTGGTGTTGATGATATGGACATATTCAAAGGTATCAGTTTAAAATTCTTGGCCGTAGAACAACTCCTACAGCAATATCCAGAAATGAAAGGTAAATTAATTCTGATCCAAATTTTAAATCCACCAAGTAGTGCTGACAAACATGTTGAGGATGCAAAGGAGGAGGCTTACATTACTGCCAAAAGGATAAATGAAAGGTTTGGTTTCGAAGGTTATGAACCTATCGTCATCATTGATCGCCATGTTCCTTTCTATGAGAAGGCGGCCTATTATGCTTTGGGAGAATGTTGCATTGTTAATGCAGTGCGCGATGGTTTGAATTTGGCTCCTTACAAGTATACTGTGTGTAGGCAGGGAAGTTCTAAACTGGATGAAGCATTAGAAATTGCTTCTGACTCTCAGCGCGTAAGTGCACTTGTCGTTTCTGAGTTTATAGGTTGCTCACCATCTTTTAGTGGAGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCTGAAGCACTAAATTTGGCAATCACAATGCCTGAGGGAGAGAAGCAGCTTCGACATGAAAAGCACTATCGATATGTTAGTTCTCATGATGTGGCCTATTGGGCTCGAAGCTTTGAGCAAGATCTAGTTTTCTCGTGCAAGGATCACTATAATAACCGATGTTGGGGCATTGGCTTTGGCCTGAACTTCAGAATTTTGTCCCTCTCTCCTAGTTTCAGGAGGCTATCCATAGACCACATTGTCCCTGCATATAAGAGGAGCAGTTGCAGGGCAATCTTTTTGGATTATGACGGCACAGTTGTACCTCAAGCTTCCATTGTTAAACCCCCCAATCCTGAAGTCATATCGGTGCTGAATAATCTCTGCAGTGATATTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAACCCTCACTTAGTGAATGGTTCGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATAAGGTGGGGTAACCATACTAGTTGGCAAATGAGTCATGCAGATACAGATACAGATTTTGCATGGAAAAGGATTGCTGAACCTGTGATGAGATCATATATGGAGGCCACAGACGGCTCCTCTGTAGAGACCAAAGACAGTGCCTTGGTATGGCATTACCGTGACGCCGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAGCCTGTAGTTGTCAAAAAGGGACAACATATAATTGAAGTCAAGCCTCAGGGCATTACTAAAGGGTTGGTTGCACAGGAAGTTCTTTCTACCCTAACCAACAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTGATGAGGACATGTTTGAGAGCATATTAGCCAACAAACCTTATAGTTCTACTTCCTCCTCCTCAGCACCACAAATATTTGCATGCACTGTTGGACAAAAACCAAGCAAGGCTAGATACTATCTAGATGACACTGTGGATGTGATGACATTACTTGAGGGTCTTGGTGCTGCTTCAGGGCCTAAATCAAGATATTCTACAGAAACCACTTTTGAGAAAAGAGAAGTATGTTTTGAAAACATTGTTTAA 2610 0.4199 MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPGIMPDGDGKQINDDDSSVFSSEHRRKIIIVSNSLPLNAKRDKTSGKWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDANEQEKVSLQLLEEFNCVPTFIPSALYKQFHDGFCKQQLWPLFHYMLPMYPGNRRFDRSQWQAYLSANKIFADKVMEVLNPEEDYVWVHDYHLMVLPTFLRKRCSRVRLGFFLHSPFPSSEVYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHEPKRGYIGFEYFGRTIFIKILPAGIHMGRLQSALDHPSSSNKVREIHQQFKGKKLIVGVDDMDIFKGISLKFLAVEQLLQQYPEMKGKLILIQILNPPSSADKHVEDAKEEAYITAKRINERFGFEGYEPIVIIDRHVPFYEKAAYYALGECCIVNAVRDGLNLAPYKYTVCRQGSSKLDEALEIASDSQRVSALVVSEFIGCSPSFSGAIRVNPWDIDAVAEALNLAITMPEGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHYNNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYKRSSCRAIFLDYDGTVVPQASIVKPPNPEVISVLNNLCSDINNTVFIVSGRGKPSLSEWFDQCENLGIAAEHGYFIRWGNHTSWQMSHADTDTDFAWKRIAEPVMRSYMEATDGSSVETKDSALVWHYRDADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIIEVKPQGITKGLVAQEVLSTLTNKGKSPDFVLCIGDDRSDEDMFESILANKPYSSTSSSSAPQIFACTVGQKPSKARYYLDDTVDVMTLLEGLGAASGPKSRYSTETTFEKREVCFENIV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0963 869 CDD HAD_TPP 592 836 - -
Aed10g0963 869 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Aed10g0963 869 Gene3D Glycogen Phosphorylase B; 51 311 - -
Aed10g0963 869 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Aed10g0963 869 SUPERFAMILY HAD-like 591 842 IPR036412 -
Aed10g0963 869 TIGRFAM T6PP: trehalose-phosphatase 591 840 IPR003337 GO:0003824|GO:0005992
Aed10g0963 869 Gene3D Glycogen Phosphorylase B; 312 528 - -
Aed10g0963 869 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 855 - -
Aed10g0963 869 Gene3D - 700 856 IPR023214 -
Aed10g0963 869 Gene3D - 590 698 IPR023214 -
Aed10g0963 869 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 794 IPR006379 -
Aed10g0963 869 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Aed10g0963 869 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 855 IPR001830 GO:0003824|GO:0005992
Aed10g0963 869 Pfam Trehalose-phosphatase 594 831 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0963 Aed-Chr10 8351530 8358121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0963 1 869 Trehalose Biosynthesis Gene Families AT1G23870 64.753 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0963 K16055 - gmx:100812031 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0963 10 8351530 8358121 Aed6g1476 6 19088838 19091874 ECH
Aed10g0963 10 8351530 8358121 Aed10g0963 10 8351530 8358121 ECH
Aed6g1476 6 19088838 19091874 Aed10g0963 10 8351530 8358121 PCT