Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0957 ATGAAGGAAGGAAACGATGGGTTTGTGAGGGCCGATCAGATTGATCTGAAGAGCATCGATGAGCAGCTGGAGAGGCACCTCAGCAAGGTGCTCATGAAGCAGAAGGAGGACGACGATGCTGCTTCCGATCACTCGCGCCATTCCAGCTCCTTCGCCGCCGCCACTAAGTTCAAGAGTGTTGCCGGGGGTGCTGGCGGCGGCGCTACTACCTTCAAGAAGAAGCAGAGGGAGGACTGGGAAATTGACCCTTCTAACCTCATCATCAAGACCGTTATAGCCAGGGGCACTTTCGGCACTGTCCACCGCGGCATCTACGATGGCCAAGATTTAAAATGCTGGACTGGGGTGAAGAAGGGCACCGGACAGACGCTGAAATTGCTGCCCTCAGGGGCAACAATGGGGTCTTCAGAATTACAGATACAGACTACTGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTGGTAGAGTATCTTGCTGGAGGTACACTGAAATCTTTTCTGATAAAGAATAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGTTATGGCATCTGCTTGTGGGAAATATATTGCTGTGACATGCCATATCCTGACCTGAGTTTCTCAGAGATTACTTCAGCCGTCGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTATATCAAATGTGATGAAGCGATGCTGGGATGCCAATCCTGATAAACGGCCAGAAATGGACGAGGTAGTTTCCATGATAGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAGCAGCAGGGTTGTTTTTGCTTCCGTAAGAACAGAGGACCTTGA 879 0.4915 MKEGNDGFVRADQIDLKSIDEQLERHLSKVLMKQKEDDDAASDHSRHSSSFAAATKFKSVAGGAGGGATTFKKKQREDWEIDPSNLIIKTVIARGTFGTVHRGIYDGQDLKCWTGVKKGTGQTLKLLPSGATMGSSELQIQTTDNGLISMPSNICCVVVEYLAGGTLKSFLIKNRRRKLAFKVVIQLALDLARGYGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSISNVMKRCWDANPDKRPEMDEVVSMIEAIDTSKGGGMIPVDQQQGCFCFRKNRGP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0957 292 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 111 - -
Aed10g0957 292 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 195 286 - -
Aed10g0957 292 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 195 - -
Aed10g0957 292 SUPERFAMILY Protein kinase-like (PK-like) 73 262 IPR011009 -
Aed10g0957 292 Pfam Protein tyrosine and serine/threonine kinase 195 262 IPR001245 GO:0004672|GO:0006468
Aed10g0957 292 Pfam Protein tyrosine and serine/threonine kinase 88 194 IPR001245 GO:0004672|GO:0006468
Aed10g0957 292 Gene3D Phosphorylase Kinase; domain 1 68 139 - -
Aed10g0957 292 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 195 286 - -
Aed10g0957 292 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 130 195 - -
Aed10g0957 292 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 111 - -
Aed10g0957 292 Gene3D Transferase(Phosphotransferase) domain 1 194 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0957 Aed-Chr10 8293495 8298133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0957 195 224 MAP Kinase Kinase Kinase AT5G50000 90.000 1.96e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed10g0957 PK_Tyr_Ser-Thr 2.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0957 - - nsy:104236083 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0957 10 8293495 8298133 Aed6g1468 6 19054675 19059835 ECH
Aed10g0957 10 8293495 8298133 Aed10g0957 10 8293495 8298133 ECH