Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0953 ATGCATTGTCCACCGTCACATAACCGCGATCTCTGGATACGACACCGTTTCGTTCTAGGGTTTCACCATGGCCATCAGAGGCGTCAATTTCAAATGGTTGACTACGCTACTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCCACAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTTGTACTTTCAATTCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCCTGTGGTTCAGCAACACTAAAATTTGCTTGCCTGGAGGGGGTCAGAAATGGGGCTTCCTTATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCTTGGCAATGGGGAAGTGGTTAAAACGAAGACAAGCGCGCATGTTAGGTGCTCAAGAGGGTATCCCTGTATCCGCATTTGGGGTTCTAGTTGAAATGATCAGAGTACCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGAGCATGGCCCAAGATGCTGCATATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCATCGTTCAGGTTAACTGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCATGTAGGAAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGGTGCTCAGTATTTCCTAATCTTGATCTCAGTGCACTGTCCAATATCCGTTCTGAGTCTGAACAGGCTTCTGCCACTGCTGTGACAAGCAGACATATGACTGACCAAACTTCTAGTCAGAGTTACCGTTTGAGATTACAGGGGCTTCTCCATCCAGTATGTGTTGACATTGCAGGGCCAGCTGGTGAGGCAGACAATGGTTTGGAAAATGTTGAAAATGGCGTTGGACCTGTTGTGACTCAAAATATATTGACTAGAGATCGGGCCACTTCTGGTGAACACATGCCTGTTAGTCTTTCCTCTTCACAAAATTAG 1098 0.459 MHCPPSHNRDLWIRHRFVLGFHHGHQRRQFQMVDYATVFTFRLLMFVDNGLASGMGLDFGWPQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFSNTKICLPGGGQKWGFLIWLLFSYCGLLCIACLAMGKWLKRRQARMLGAQEGIPVSAFGVLVEMIRVPDWAFEAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELPSFRLTAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRSESEQASATAVTSRHMTDQTSSQSYRLRLQGLLHPVCVDIAGPAGEADNGLENVENGVGPVVTQNILTRDRATSGEHMPVSLSSSQN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0953 365 SMART ring_2 221 261 IPR001841 -
Aed10g0953 365 Pfam Ring finger domain 220 262 IPR001841 -
Aed10g0953 365 SUPERFAMILY RING/U-box 203 270 - -
Aed10g0953 365 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Aed10g0953 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 31 345 IPR044793 GO:0004842|GO:0010182
Aed10g0953 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 31 345 - -
Aed10g0953 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 267 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0953 Aed-Chr10 8240217 8244992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0953 45 341 C3H Transcription Factor Family AT3G47990 69.307 6.03e-146 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0953 K16284 - gmx:100786854 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0953 10 8240217 8244992 Aed10g0953 10 8240217 8244992 ECH
Aed6g1465 6 19028154 19032993 Aed10g0953 10 8240217 8244992 PCT