Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0935 ATGGATCTTGAGACAATGCTCAAAGAAACCTATGTTTCAGTTTCACAGCCAATAATGCATTTACGAGAAAGCTTCTTGCAACCTAACATCAAAGATATGCTTCCTTTTGGGAATCCTTCATCTCATGCATTCGTGCAAGATTTTCACCAAATTGATCAATTTCAAGTGAATTTCCCCTCATCCAATCCAATCCATAGTACTCCAAATTTGGATGCTTTTGATAATTTCACCTTTAATGGTTCATCACCTGATTTTGATGTTTATGAGTGCAAGCCTTTTGTGGAGAATAATAACATTGGTGAGCATGCGCATGTTATGGACAATTTCTTGTATGGAAATTATAGCTTGAACAACCTCCCTCAAAGGAATCAACAACTAGATCATATGATTGTTGCAAATCATCATCAAAGTTTTTTTCCTTTTAATCTTCCTCAAGAAATCATCAAGCCCTCCAATTTTGTTGTGCCAGATGAAGTTTCGTGCATATCCCCGGTGAATTATTACAAAAGAGTTGGCATGAACAAAAATAATAAACCCTATCCAACCACTAGAAGAACATACAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGGCAGTGGACAATAGAAGAAGATGGGTTGTTGATTCAGCTGGTGGAACAATATGGATTGAGGAAGTGGTCTCATATTGCAAAGTTATTGCCCGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCACAACCATCTAAGGCCTGACATTAAGGACACATGGAGTGATGAAGAGGATAAAGTACTAATAGAAGCTCATGCTGAGGTAGGAAACAAATGGGCAGAGATTGCGAAAAGGTTGCCAGGAAGAACTGAGAACTCAATAAAGAACCATTGGAACGCGACAAAGAGGAGGCAATATTCCAAGAGAAAGTGTCGCACAAAGCACCCTAGAGGCACTCTTCTTCAAGAGTATATCAAGAGCTTGAACCTAGACAAGAACCCCCCAAGAGACTATAGGAGAAAATCAACAACTGCTAATAATAATAACTATGCTGCCATCATGATGAGTAACAAAACCAAACTCACTACTGCTGATCAATTTTGTGCTACTGCTACTGCTGCTGCCACTGATCATAGTTGCTTGGCACCAAATAATTATGATTTTAATTATGTGGTTCCGGATTTCTTCTTTGGTGAGGTGAATTTGTTTGAAGAAGGGTGTAGCATTGATTCTCTTCTGGATGGTGTGGCTCTTATGGATAAGAAAGATTCTGAAGGAAGAAAATTAATGCAATGTGATCCTACAATATTAATGGAGGGAATGAAGTGTGATGATGATCCTTTTGTTAATGTTGTCGATGAGAATCATGTTGAGATGGAGATGCCATTTGAGATGTTGTTGGAGGTTGAAGTTAAGAAGGAGTTGGATTTGGTTGAGATGATGTCTCAGATTAACAGTGAAATTGTTCATGTGTGA 1449 0.3858 MDLETMLKETYVSVSQPIMHLRESFLQPNIKDMLPFGNPSSHAFVQDFHQIDQFQVNFPSSNPIHSTPNLDAFDNFTFNGSSPDFDVYECKPFVENNNIGEHAHVMDNFLYGNYSLNNLPQRNQQLDHMIVANHHQSFFPFNLPQEIIKPSNFVVPDEVSCISPVNYYKRVGMNKNNKPYPTTRRTYKVRKKSNIVKGQWTIEEDGLLIQLVEQYGLRKWSHIAKLLPGRIGKQCRERWHNHLRPDIKDTWSDEEDKVLIEAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRTKHPRGTLLQEYIKSLNLDKNPPRDYRRKSTTANNNNYAAIMMSNKTKLTTADQFCATATAAATDHSCLAPNNYDFNYVVPDFFFGEVNLFEEGCSIDSLLDGVALMDKKDSEGRKLMQCDPTILMEGMKCDDDPFVNVVDENHVEMEMPFEMLLEVEVKKELDLVEMMSQINSEIVHV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0935 482 CDD SANT 250 293 IPR001005 -
Aed10g0935 482 PANTHER BNAC07G50190D PROTEIN 129 333 - -
Aed10g0935 482 Pfam Myb-like DNA-binding domain 249 290 IPR001005 -
Aed10g0935 482 Pfam Myb-like DNA-binding domain 197 243 IPR001005 -
Aed10g0935 482 ProSiteProfiles Myb-like domain profile. 248 293 IPR001005 -
Aed10g0935 482 Gene3D - 196 249 - -
Aed10g0935 482 SMART sant 196 245 IPR001005 -
Aed10g0935 482 SMART sant 247 295 IPR001005 -
Aed10g0935 482 Gene3D - 250 313 - -
Aed10g0935 482 CDD SANT 200 243 IPR001005 -
Aed10g0935 482 PANTHER MYB PROTEIN-RELATED 129 333 - -
Aed10g0935 482 ProSiteProfiles Myb-like domain profile. 192 243 IPR001005 -
Aed10g0935 482 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 247 IPR017930 -
Aed10g0935 482 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 297 IPR017930 -
Aed10g0935 482 SUPERFAMILY Homeodomain-like 194 289 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0935 Aed-Chr10 7923631 7925646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0935 86 407 MYB Transcription Factor Family AT4G18770 50.000 8.03e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g0935 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0935 K09422 - gmx:102662267 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0935 10 7923631 7925646 Aed6g1450 6 18827712 18829806 ECH
Aed10g0935 10 7923631 7925646 Aed10g0935 10 7923631 7925646 ECH
Aed6g1450 6 18827712 18829806 Aed10g0935 10 7923631 7925646 PCT