Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0913 ATGGGTATGGGTCCCATCAACATAAAGGGAGAAATAGAGAGGGTGAATGGTAATGAACTGAGTTACGGTGAATTTGTGAAGAGATATATGGACAAGAACCAGCCAGTGGTTCTCACTGGGCTAATGGACCCTCATCATTGGAGATCTTCCACTGATTGGATCACACATAACGCCCAACCCAACTTTCAATTTTTCTCAACTCATTTTGGTGCTTCTAAAGTTCAGGTTGCTGATTGTGATACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGCTGGTCTCGGATTTTGTAGCGCGTTGCCTTCAGCTTCAGGAGGAGGCTTCTGCTGTTCAGTGTAATAATGAAAATTGTGGAAGTAATGATGGTGCCTCTGTATCTGTACTGTACTTGAAGGATTGGCATTTTGTAAAGGAATATCCTGAATATGTAGCATACGTCACTCCAATGTTCTTTTGTGATGATTGGCTCAACCTGTATCTTGACAACTTCAGAATACATATTGATTCTGACACACGCCAACCAGATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGAGTGAAAGGTGTGTTAATAGGTGTAATAAATTCTTCTAGTAGAAATGCATATGGGATTATTCTGTACTTCCCTTTACAGAGAGATGAAAAACCCACCAGTAACCTCTTGCTTTCAATTATTCTGGCAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGCGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAACATCTTTGATGAAGTATCAAACTCAAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTAGAATGCACACAAGATGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAAAAGACATGGAAGTACCACTGAAAGTTCATCAACAATTGTTCAGCATTTATCCATGAATCTTGGTTGTTTAAGGAGGACTGCATCAGAGATGAAACACATGCATGCTCTAGAAGGAAATCATGATTGTGTTGTGGATATGATCAAAGCATTTGAAGATCCTAGGTTTTCCAAATTATGCATGCATTTAGGAAGAACTTATATAATAATACACAAGCAATCGTACTTGTCCTTGGATTTTGAGAGCACTTCAATGAGTGATTTGGTGGACCTCAATGATATGACATCTTACTCATCTCCAATCTACACACCTGAAGATCTCATTAAATTTATAGACAATAGTGTTGCTGAACTGGGTGACTGTTTCATTGAGGAGCCATCTGTACTCCATGTTGCTTGA 1611 0.3892 MGMGPINIKGEIERVNGNELSYGEFVKRYMDKNQPVVLTGLMDPHHWRSSTDWITHNAQPNFQFFSTHFGASKVQVADCDTREFTDQKREEMLVSDFVARCLQLQEEASAVQCNNENCGSNDGASVSVLYLKDWHFVKEYPEYVAYVTPMFFCDDWLNLYLDNFRIHIDSDTRQPDEEICCSDYRFVYMGVKGVLIGVINSSSRNAYGIILYFPLQRDEKPTSNLLLSIILAGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINKRHGSTTESSSTIVQHLSMNLGCLRRTASEMKHMHALEGNHDCVVDMIKAFEDPRFSKLCMHLGRTYIIIHKQSYLSLDFESTSMSDLVDLNDMTSYSSPIYTPEDLIKFIDNSVAELGDCFIEEPSVLHVA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0913 536 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 9 193 - -
Aed10g0913 536 SUPERFAMILY Clavaminate synthase-like 12 349 - -
Aed10g0913 536 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 232 522 - -
Aed10g0913 536 Pfam Cupin-like domain 24 332 IPR041667 -
Aed10g0913 536 ProSiteProfiles JmjC domain profile. 163 349 IPR003347 -
Aed10g0913 536 Gene3D Cupin 2 333 - -
Aed10g0913 536 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 232 522 - -
Aed10g0913 536 SMART cupin_9 191 349 IPR003347 -
Aed10g0913 536 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 9 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0913 Aed-Chr10 7692561 7696588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0913 10 341 Glycosyltransferase AT1G78280 22.515 9.93e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed10g0913 Cupin_8 5.4e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0913 - - gmx:100803814 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0913 10 7692561 7696588 Aed10g0913 10 7692561 7696588 ECH