Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0887 ATGGAATCTGAAGGTAGGTTCTACTCAGTTGATGAGTTCAGATTGGACCCCAAATGGCTGATTGACCCTAAGCATCTCTTTGTTGGGCCACATATTGGAGAAGGAGCTCATGCCAGAGTCTATGAGGGAAACAAAAGATATTTTATTGGTGCTTGTAATGAGCCAGTAATGGTGATAGTCACTGAGCTGTTATTAGGAGGAACATTACGTAAGTATTTGCTTAACATGCGCCCCAAATGCTTGGAAAGACATGTTGCCATTGGTTTTGCGCTTGATATTGCACGGGCTATGGAGTGCCTGCATTCTCATGGGATCATTCACCGTGATCTTAAACCTGATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGGTTTAGCAAGAGAAGAGTCATTAACTGAGATGATGACTGCTGAGACGGGAACTTACCGTTGGATGGCTCCCGAGAATGTAAGGCCAAGTGCAGAAAATCTTCCTGAGGAATTGGCTGAAATTCTTACTTCATGCTGGCAAGAGGACCCAAATGCACGACCCAACTTCACCCAAATAATCCAAATGCTCCTAAATTACCTTTACACCGTCGCACCGCCTGAACCCATGATTCCTTCAAGAATATTCAGTTCTGAGAACACTGTCTTTCCACCAGAGTCCCCTGGTACTAGCTCCTTAATGGCGAAACGTGATGACACAGGCGATACACCAAGAGGAGCAAAGGATGAAATCAAGCCTAACGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA 780 0.441 MESEGRFYSVDEFRLDPKWLIDPKHLFVGPHIGEGAHARVYEGNKRYFIGACNEPVMVIVTELLLGGTLRKYLLNMRPKCLERHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPENVRPSAENLPEELAEILTSCWQEDPNARPNFTQIIQMLLNYLYTVAPPEPMIPSRIFSSENTVFPPESPGTSSLMAKRDDTGDTPRGAKDEIKPNGFLCCFSQCY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0887 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Aed10g0887 259 Gene3D Transferase(Phosphotransferase) domain 1 159 199 - -
Aed10g0887 259 Pfam Protein tyrosine and serine/threonine kinase 159 192 IPR001245 GO:0004672|GO:0006468
Aed10g0887 259 Pfam Protein kinase domain 54 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0887 259 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 155 233 - -
Aed10g0887 259 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 47 154 - -
Aed10g0887 259 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 46 - -
Aed10g0887 259 MobiDBLite consensus disorder prediction 217 232 - -
Aed10g0887 259 Gene3D Transferase(Phosphotransferase) domain 1 24 158 - -
Aed10g0887 259 MobiDBLite consensus disorder prediction 217 243 - -
Aed10g0887 259 SUPERFAMILY Protein kinase-like (PK-like) 17 220 IPR011009 -
Aed10g0887 259 SMART serkin_6 26 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0887 259 PANTHER SERINE-THREONINE PROTEIN KINASE 155 233 - -
Aed10g0887 259 PANTHER SERINE-THREONINE PROTEIN KINASE 47 154 - -
Aed10g0887 259 PANTHER SERINE-THREONINE PROTEIN KINASE 1 46 - -
Aed10g0887 259 ProSiteProfiles Protein kinase domain profile. 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0887 Aed-Chr10 7427509 7431826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0887 9 259 MAP Kinase Kinase Kinase AT5G50180 55.652 1.27e-124 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed10g0887 Pkinase 4.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0887 - - gmx:100796593 448.743