Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0886 ATGAGTGCTCCAATGGAGACGGAGCTCACAACCGACCAAAACGGCGCCGCTTCCCAACACTCACTTCCCGAGGACAAAATTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACAGCTAAAATCGACGATGTTCGTTCCGCCATTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGATCCATTCCGGTGCCTCTTGATGACGCGTTTCTCACAGATAACGTGCAAAGAATTTGTGTTTGTGGATGTGATACTGAGGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGACCATGTGAGGATATAACCTCTGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATTTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAGGGGGTTGACTCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCACCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAATTATCAATTCGATTCAATTCAAGTCTACCAATAATTCCCAATGAAAACAAATACCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTATTAATTGTATGTGCTTATGATCCTGCAGATGAAGTTGAAAGCCTTGCTGCTGCTAGAAAAGCTTCTTTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATCATTCTAACCACGTCCAACATAACTGCAGCTATCGATATTGCTTTTGTTGATCGAGCCGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATGCGTACTGGTATATTGACTAGTTTAAAGGATTGCAAGAATGTCATGCTTCCAAGTTATGCTAGTGCAAAGGATAGGGTGAACGCTCCAGATTTTCACGAGGATGCTACATTCATGCAACTGTGCAAGCAACTACTTGAAGCTGCAGAGTCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTATGTACAATGATAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1389 0.419 MSAPMETELTTDQNGAASQHSLPEDKILVPVEVTLKPSSTAKIDDVRSAIEGMLEKRSLSYIDGSIPVPLDDAFLTDNVQRICVCGCDTEEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDITSDGQSSSFNEWILPAKEFDGIWESLIYESGLKQRLLRYAASALLFTEKGVDSFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSSLPIIPNENKYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIVCAYDPADEVESLAAARKASLSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLKDCKNVMLPSYASAKDRVNAPDFHEDATFMQLCKQLLEAAESCEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIETAKRERSELPD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0886 462 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 19 459 IPR044539 -
Aed10g0886 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 431 IPR027417 -
Aed10g0886 462 Pfam ATPase family associated with various cellular activities (AAA) 184 345 IPR003959 GO:0005524|GO:0016887
Aed10g0886 462 SMART AAA_5 180 348 IPR003593 -
Aed10g0886 462 MobiDBLite consensus disorder prediction 1 20 - -
Aed10g0886 462 MobiDBLite consensus disorder prediction 1 22 - -
Aed10g0886 462 ProSitePatterns AAA-protein family signature. 318 337 IPR003960 GO:0005524|GO:0016887
Aed10g0886 462 CDD AAA 182 346 - -
Aed10g0886 462 Gene3D - 124 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0886 Aed-Chr10 7419166 7423410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0886 184 366 Calmodulin-binding Proteins AT3G56690 27.027 2.30e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0886 K22399 - gmx:100795009 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0886 10 7419166 7423410 Aed10g0886 10 7419166 7423410 ECH