Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0882 ATGGCAGTTTCTTCAGCAACAGCCTCCTCCAAACTCATACTCTTCACCCACGCCCATGCATCATCTTCTTCGTCGTCCTCTTCCCCTAGTTCGACACCCTTCCGTTCCTCCACCACCACCCACAAACTAACAACCCCTCTCTCCTCCTCCTTCCTCCACACCACAACCCTCCTCCGCCGCACCCCCTCCACAACCACCTCCCCCCGTCGCACCTTCACTGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACAATCGGCCACGTGGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTGGCCGCCCTCGGCAACAGCGCCCCGAAAAAGTACGACGAGATCGACGCCGCCCCTGAAGAACGCGCCCGCGGCATCACCATCAACACAGCAACGGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCGCAGATGGACGGCGCAATCCTAGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCCTGGCCAAACAAGTCGGAGTCCCCAACATGGTCGTCTTCCTCAACAAACAAGACCAAGTCGACGACGAAGAGCTTCTCCAGTTAGTCGAGCTCGAAGTCCGCGACCTCCTCAGCTCCTACGAGTTTCCAGGAGACGACACCCCCATCGTCTCGGGATCCGCGCTCTTAGCCCTAGAAGCACTCATGGCCAACCCCGCCATCAAGCGCGGCGACAACGAGTGGGTCGACAAAATCTATAAACTCATGGACGAAGTCGACAGCTACATTCCCATCCCGCAGCGCCAGACCGACCTCCCCTTCCTCCTCGCCGTCGAAGACGTCTTCTCCATCACCGGACGCGGCACGGTCGCCACTGGACGCGTGGAGCGCGGCACCGTCAAAGTAGGAGAAACCGTCGACCTTGTAGGGTTACGAGAAACACGAAACTTCACAGTCACTGGAGTGGAAATGTTCCAGAAGATTCTAGACGAAGCGCTAGCCGGCGACAACGTGGGGCTTCTTCTGAGAGGGATTCAGAAGACGGACATTCAGCGAGGGATGGTGCTGGCGAAGCCCGGGACGATTACGCCGCACACGAAATTCTCGGCGATTGTGTATGTTTTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCGTTTTTTGCAGGGTACAGGCCGCAGTTTTACATGAGGACAACCGATGTGACAGGGAAGGTGACGGCGATCATGAACGATAAGGATGAGGAGTCGAAGATGGTCATGCCCGGTGACCGTGTCAAGATTGTGGTGGAGCTTATTGTGCCGGTGGCTTGCGAACAGGGGATGAGGTTTGCTATTAGGGAAGGTGGCAAGACCGTTGGTGCTGGTGTTATCCAATCCATCATTGAGTGA 1455 0.5876 MAVSSATASSKLILFTHAHASSSSSSSSPSSTPFRSSTTTHKLTTPLSSSFLHTTTLLRRTPSTTTSPRRTFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRDLLSSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIYKLMDEVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRNFTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0882 484 Gene3D - 77 288 IPR027417 -
Aed10g0882 484 Pfam Elongation factor Tu GTP binding domain 85 286 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 289 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 PRINTS GTP-binding elongation factor signature 169 180 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 PRINTS GTP-binding elongation factor signature 206 215 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Aed10g0882 484 CDD EFTU_II 296 382 IPR033720 -
Aed10g0882 484 Gene3D Translation factors 423 483 - -
Aed10g0882 484 Pfam Elongation factor Tu domain 2 310 378 IPR004161 GO:0005525
Aed10g0882 484 TIGRFAM EF-Tu: translation elongation factor Tu 77 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed10g0882 484 CDD EFTU_III 385 479 - -
Aed10g0882 484 Pfam Elongation factor Tu C-terminal domain 383 482 IPR004160 -
Aed10g0882 484 Gene3D Translation factors 291 419 - -
Aed10g0882 484 PANTHER ELONGATION FACTOR TU-RELATED 32 484 - -
Aed10g0882 484 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Aed10g0882 484 Hamap Elongation factor Tu [tuf]. 76 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aed10g0882 484 MobiDBLite consensus disorder prediction 21 46 - -
Aed10g0882 484 SUPERFAMILY Translation proteins 290 386 IPR009000 -
Aed10g0882 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 311 IPR027417 -
Aed10g0882 484 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 383 483 IPR009001 -
Aed10g0882 484 TIGRFAM small_GTP: small GTP-binding protein domain 88 220 IPR005225 GO:0005525
Aed10g0882 484 PANTHER ELONGATION FACTOR TU 32 484 - -
Aed10g0882 484 CDD EF_Tu 86 288 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0882 Aed-Chr10 7397860 7399314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0882 83 482 Eukaryotic Initiation Factors Gene Family AT5G60390 30.067 3.68e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0882 K02358 - gmx:100793431 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0882 10 7397860 7399314 Aed10g0882 10 7397860 7399314 ECH
Aed6g1403 6 18536555 18539154 Aed10g0882 10 7397860 7399314 PCT