Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0872 ATGGAGATGGAGCGCATCGTTGAATTTCCTCACACCTACATGGATCGGCCCCCGAGAAAGAGGGCGCGTTTGGGCTGGGACATCGCTGAGGCCCCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGATTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGCCATTACATATTTGAGCTTGGAGAAAATTTAACTTCTCGCTATAAGATACATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGCATAAAGAAGTATCGAGAGGCAGCCATGATTGAAATTGAGGTATTGCAACAGCTTGGGAAACATGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTAATTATGCATGACTTACGCATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCACCAGAGTATCTCAAAATTCCTGACTACAAGAGTACAACTAGATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACTTACATTGTATCAACTCGTCATTATAGGGCACCTGAAGTTATTCTTGGACTTGGGTGGAGCTATCCATGTGATGTATGGAGTGTGGGTTGTATATTGGTTGAATTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCTATGATGGAGAGGGTGCTTGGTCCTATACCGCAGCAGATGTTAAAGAGAGTTGACCGACATGCAGAGAAGTATGTCCGAAGGGGTAGGTTGGACTGGCCAGAGGGTGCAACCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGAACCTTATAATGCAGCATGTCGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGATGCTTTGAGGCATTCCTTCTTTACGAGAGATCACCTTAGGAGATAA 1167 0.4353 MEMERIVEFPHTYMDRPPRKRARLGWDIAEAPKAQVGLFCGQEVENISSYAPSEHPPSSLFKGFARNGSPPWRDDDKDGHYIFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGSNRCVQIRNWFDYRNHICIVIMHDLRMIHTDLKPENILLVSPEYLKIPDYKSTTRSPSSFFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFTRDHLRR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0872 388 SUPERFAMILY Protein kinase-like (PK-like) 80 385 IPR011009 -
Aed10g0872 388 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 171 388 - -
Aed10g0872 388 SMART serkin_6 93 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0872 388 PANTHER KINASE AFC1 1 170 - -
Aed10g0872 388 ProSiteProfiles Protein kinase domain profile. 93 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0872 388 Gene3D Transferase(Phosphotransferase) domain 1 172 381 - -
Aed10g0872 388 Pfam Protein kinase domain 93 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0872 388 Pfam Protein kinase domain 172 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0872 388 CDD PKc_CLK 80 381 - -
Aed10g0872 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Aed10g0872 388 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 170 - -
Aed10g0872 388 PANTHER KINASE AFC1 171 388 - -
Aed10g0872 388 Gene3D Phosphorylase Kinase; domain 1 68 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0872 Aed-Chr10 7313140 7316844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0872 92 381 Core Cell Cycle Gene Families AT2G38620 26.557 3.08e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Aed10g0872 Pkinase 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0872 K08287 - gmx:100808961 773.467