Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0867 ATGAGTATCACTTCCAGTGCCTTAAAGTCCCTAACCATGGCCGTGTCGTGCCCCCTCTCTTCTCACTCCTCACTCTTCCACAACAAAACTAAACCCTATCTCTTCTCTTCACCTCCCTCCAAACCCTTCACGCTCCATTTCTCGTTCCTCAACTCCTCAGTCTCTCTCTCCCTCGCCGCACGAACCCACCGCTTCCCCGTCGTCAGGCACGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAACAACAAACCGAAGAAGACGTGGAACCGCCGGAGGAGGCAAAGCTCTTCGTCGGTAACTTGCCTTACGACCTTGATAGCCAGAAGTTGGCCATGCTTTTTGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGTGGATTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAAACCGCTGTGGAGAAATTCAATCGCTACGATATTGATGGAAGACAGTTGACTGTTAACAAGGCTTCTCCAAGAGGAACTCGGCCCGAACGTGCACCTCGTCGTGCCTCTGAGACTGCTGCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGACTTGAGCAAATTTTCAGTGAACATGGTAATGTTGTGAGTGCTCGGGTAGTCTATGACAGGGAGAGTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGACAATTAAGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA 831 0.4946 MSITSSALKSLTMAVSCPLSSHSSLFHNKTKPYLFSSPPSKPFTLHFSFLNSSVSLSLAARTHRFPVVRHVAQTSDWAQQEEQQTEEDVEPPEEAKLFVGNLPYDLDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDIDGRQLTVNKASPRGTRPERAPRRASETAALSIYVGNLPWDVDNTRLEQIFSEHGNVVSARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGQSLDGRTIKVSVAEDRPRRGSF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0867 276 PANTHER RIBONUCLEOPROTEIN 85 276 - -
Aed10g0867 276 Gene3D - 186 276 IPR012677 -
Aed10g0867 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Aed10g0867 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 166 IPR000504 GO:0003723
Aed10g0867 276 PANTHER OS02G0815200 PROTEIN 85 276 - -
Aed10g0867 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Aed10g0867 276 SUPERFAMILY RNA-binding domain, RBD 192 274 IPR035979 GO:0003676
Aed10g0867 276 PANTHER OS02G0815200 PROTEIN 3 86 - -
Aed10g0867 276 Gene3D - 67 185 IPR012677 -
Aed10g0867 276 CDD RRM_HP0827_like 96 173 - -
Aed10g0867 276 PANTHER RIBONUCLEOPROTEIN 3 86 - -
Aed10g0867 276 SMART rrm1_1 96 169 IPR000504 GO:0003723
Aed10g0867 276 SMART rrm1_1 192 265 IPR000504 GO:0003723
Aed10g0867 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Aed10g0867 276 CDD RRM_HP0827_like 193 268 - -
Aed10g0867 276 SUPERFAMILY RNA-binding domain, RBD 85 184 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0867 Aed-Chr10 7261084 7264027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0867 97 273 Eukaryotic Initiation Factors Gene Family AT3G16380 35.829 1.27e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0867 - - gmx:100790280 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0867 10 7261084 7264027 Aed6g1387 6 18428769 18431669 ECH
Aed10g0867 10 7261084 7264027 Aed10g0867 10 7261084 7264027 ECH
Aed6g1387 6 18428769 18431669 Aed10g0867 10 7261084 7264027 PCT