Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed10g0867 | ATGAGTATCACTTCCAGTGCCTTAAAGTCCCTAACCATGGCCGTGTCGTGCCCCCTCTCTTCTCACTCCTCACTCTTCCACAACAAAACTAAACCCTATCTCTTCTCTTCACCTCCCTCCAAACCCTTCACGCTCCATTTCTCGTTCCTCAACTCCTCAGTCTCTCTCTCCCTCGCCGCACGAACCCACCGCTTCCCCGTCGTCAGGCACGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAACAACAAACCGAAGAAGACGTGGAACCGCCGGAGGAGGCAAAGCTCTTCGTCGGTAACTTGCCTTACGACCTTGATAGCCAGAAGTTGGCCATGCTTTTTGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGTGGATTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAAACCGCTGTGGAGAAATTCAATCGCTACGATATTGATGGAAGACAGTTGACTGTTAACAAGGCTTCTCCAAGAGGAACTCGGCCCGAACGTGCACCTCGTCGTGCCTCTGAGACTGCTGCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGACTTGAGCAAATTTTCAGTGAACATGGTAATGTTGTGAGTGCTCGGGTAGTCTATGACAGGGAGAGTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGACAATTAAGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA | 831 | 0.4946 | MSITSSALKSLTMAVSCPLSSHSSLFHNKTKPYLFSSPPSKPFTLHFSFLNSSVSLSLAARTHRFPVVRHVAQTSDWAQQEEQQTEEDVEPPEEAKLFVGNLPYDLDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDIDGRQLTVNKASPRGTRPERAPRRASETAALSIYVGNLPWDVDNTRLEQIFSEHGNVVSARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGQSLDGRTIKVSVAEDRPRRGSF | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed10g0867 | 276 | PANTHER | RIBONUCLEOPROTEIN | 85 | 276 | - | - | |
Aed10g0867 | 276 | Gene3D | - | 186 | 276 | IPR012677 | - | |
Aed10g0867 | 276 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 193 | 263 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 97 | 166 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | PANTHER | OS02G0815200 PROTEIN | 85 | 276 | - | - | |
Aed10g0867 | 276 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 95 | 173 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | SUPERFAMILY | RNA-binding domain, RBD | 192 | 274 | IPR035979 | GO:0003676 | |
Aed10g0867 | 276 | PANTHER | OS02G0815200 PROTEIN | 3 | 86 | - | - | |
Aed10g0867 | 276 | Gene3D | - | 67 | 185 | IPR012677 | - | |
Aed10g0867 | 276 | CDD | RRM_HP0827_like | 96 | 173 | - | - | |
Aed10g0867 | 276 | PANTHER | RIBONUCLEOPROTEIN | 3 | 86 | - | - | |
Aed10g0867 | 276 | SMART | rrm1_1 | 96 | 169 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | SMART | rrm1_1 | 192 | 265 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 191 | 269 | IPR000504 | GO:0003723 | |
Aed10g0867 | 276 | CDD | RRM_HP0827_like | 193 | 268 | - | - | |
Aed10g0867 | 276 | SUPERFAMILY | RNA-binding domain, RBD | 85 | 184 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed10g0867 | Aed-Chr10 | 7261084 | 7264027 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed10g0867 | 97 | 273 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 35.829 | 1.27e-23 | 98.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed10g0867 | - | - | gmx:100790280 | 417.542 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed10g0867 | 10 | 7261084 | 7264027 | Aed6g1387 | 6 | 18428769 | 18431669 | ECH | |
Aed10g0867 | 10 | 7261084 | 7264027 | Aed10g0867 | 10 | 7261084 | 7264027 | ECH | |
Aed6g1387 | 6 | 18428769 | 18431669 | Aed10g0867 | 10 | 7261084 | 7264027 | PCT |