Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0857 ATGAGGATGCAAGTGGGTCCCATGTGTTTAGTTCAATCACGCCATGTAGTCCGGGTTTTCTCTCTTTATATACATCCCCTACTACTTACATCACTCCTCACCTCTCTCTTTAGAGCCACTATGAGAAGCACTCTTCTGTCTTTGCTTTTCTTGCTCTTCTCCCTTCCAACCCTCATTTCTTCTTCACCGGTTCAAGACCCTGAAGAGGTCATACAAGAGGTCAACAGGGACGGCAAGGTCTACGTTGTAGACGACGCCGGCGACGACGACCCGGTGAACCCGAAACCCGGAACCCTCCGCCACGCCGTGATCCAAGACGAGCCCCTATGGATCACCTTCGCAAGAGACATGGTCATCCAACTCAAAGAGGAGCTTCTCATGAACTCCTTCAAGACAATCGACGGCCGAGGCGCCAGCGTCCACGTGGCGGGTGGTCCATGCATCACCATACAGTACGTGACCAACGTCATCATACATGGGATCCACATCCACGACTGCAAGCAGGGCGGGAACGCTATGGTGCGGGACTCCCCACAGCACTACGGCTGGAGAACCGTGTCGGACGGCGACGGGGTTTCCATCTTCGGCGGAAGCCACGTGTGGATCGACCATTGCTCCTTGTCTAACTGTAACGACGGGTTGATCGACGCCATCCATGGGTCCACCGCTATTACCATCTCTAATAACTACATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGCGACTCTTACACCCAGGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCTAGGGTATTTCCATGTGGTGAACAATGATTATACTCATTGGGAGATGTATGCCATTGGTGGAAGTGCTAATCCAACCATCAACTGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAGGATGCACCAGAGAGTGAGTGGCAGGATTGGAATTGGAGGTCAGAAGGGGATTTGTTAGGAAACGGTGCGTTTTTCACAGCATCGGGTGTTGGAGCATCCTCTAGCTATGCACGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAATAGGTTCTGGTGCACTCAGTTGTAAAAAAGGTTCTCCTTGCTGA 1173 0.5072 MRMQVGPMCLVQSRHVVRVFSLYIHPLLLTSLLTSLFRATMRSTLLSLLFLLFSLPTLISSSPVQDPEEVIQEVNRDGKVYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWITFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPQHYGWRTVSDGDGVSIFGGSHVWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQDWNWRSEGDLLGNGAFFTASGVGASSSYARASSLSARPSSLVGSITIGSGALSCKKGSPC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0857 390 SUPERFAMILY Pectin lyase-like 76 376 IPR011050 -
Aed10g0857 390 Pfam Pectate lyase 125 307 IPR002022 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Aed10g0857 390 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Aed10g0857 390 Gene3D - 73 383 IPR012334 -
Aed10g0857 390 SMART amb_all 116 313 IPR002022 -
Aed10g0857 390 PANTHER PECTATE LYASE 18-RELATED 76 387 IPR045032 GO:0030570
Aed10g0857 390 PANTHER PECTATE LYASE 76 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0857 Aed-Chr10 7183578 7186228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0857 76 390 Polysaccharide Lyase AT5G63180 84.543 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0857 K01728 - gmx:100814679 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0857 10 7183578 7186228 Aed6g1379 6 18382204 18384155 ECH
Aed7g1904 7 22135608 22137811 Aed10g0857 10 7183578 7186228 ECH
Aed10g0857 10 7183578 7186228 Aed10g0857 10 7183578 7186228 ECH
Aed6g1379 6 18382204 18384155 Aed10g0857 10 7183578 7186228 PCT