Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0854 ATGATGGATGGGAGGCGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCCTCAACTAATTCCATGAGCAAACTCTCTTCTCTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGTAATGAGATTTCCCTGCGGTTTTTGGACGCTGCTCGGCTGTGTAATTCCAATGACAATGCTGCTTTCGGGTCAAGGAATTCAGGTTTCAAGGGACAACGGGAGCCGCTGTATGATGCTGATTTTGTATTGAATCATGGCTTGTTGAACTCAAGGTTGAAGCCTAATCAACAAGATGATGAACTGGTTTACTCTAAGCCTAATCTGCAGTGCAATTCTGGGGATAAATCACCAAGTGAAAGCTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGTCTTGTACTGTGCTTCCAAATAATAACTTCAAGGATAGAGACTCATGCTATATAGAAACTGCTAGATCATCTGAATTACGGAGAATTGATTGCACAAAGTCAGCCAAGAAGTCTCTACGCAAGAATCAAGTAAAACCGTCGTCATCGATGGAGGTGGTGGGAAGTATTGCTAGCAATGTAGGCAGTCCATGTCCTTCTGGTTATGATGCTTTTTCACCATATAGTCTTTCAGTAGGTATAAATCAAGCTGATGATGTCTTAGATAATACTGATGATGGATGTGGAATAAGCTTCTGCTGGTCAAAATCACCAAGGTTCAGAGAATCAAATCTATATGGCGAGATAGAAGACCGTCCCTTGATATCACACCGTGTTGATGATGAGACGGATCTTTGTGTTCATAGAAGCATGAGACACAATGGTGGTCATGGGATTAGTCCAACATTGGAAACTCCTAGAAGTTTATCTATGAAATTCAAGCCTAAGTCATTTGGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGAGTGCCATCTCCAGAGGAAAAATAACATCATTTTATCTCTTCTATGGTCCACGCGGCACCGGCAAGACATCCGCGTCTAGGATATTCGCTGCTGCACTGAATTGCCTCTCTGTTGTGGAGCAAAGGCCATGTGGTTTATGCAGAGAATGCGTTCTATTGTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATAAACCGTGCAGACCAGGTTAAATCCCTTGTTAAGAATGCAAGCATCCCTCCAGTTTCATCGCGTTTTAAGGTTTTGATTATTGATGAGTGTCAGCTATTGAATGGGGAGACATGGGCCAGCCTTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATAGCTCCGGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTTTCACTTTCCGAAGGTTAAGGATGCTGACATTGTATGCAGATTAGAAAAGATTTGCACCGAGGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTCATTGCTGCGAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAGGATCAATATCTCTTTAGCTTACGAGCTCACTGGGATCGTCTCTGATGACGAATTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACGGTTATAAGAGCACGAGAGCTGATGAGATCAAGGATTGATCCTTTGCAACTTGTATCGCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAAGTAAATTTTCTAGGAGATATACCTCTGATCTTCAGAAACTAAACAATGCATTGAAAGTTCTTTCTGAAACCGAGAAGCAGTTAAGAATCTCGAAGAATCAAACAACATGGTTCACAGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCATTCTGTCGATGCAAATGATACCAAGTTGAGTAGTCTTGGAGGTGCATGCAATGGAGGGCAAAGCTTGGAACATTTTGCTACAGGTCTGTGTGATAACAAGTCATACAGATTAGAAGTGCCAGAAGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGCCATTCTAGTCAGCTCAAAACTTTTCTCCGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCAGTGCAGCTTGTCTAGCTATTGCCAAGTTGGAGTTCCACCATCGCCACCATGTATCTAAGGCCGAGAAGTCATGGAAAGCAATTGCAAGTTCCTTGCAGTTCATACTGGGTTGCAGCATTGAGTTGAGGATCACTTATGGGCCGGGTGCTTCTGATTCTAAATACGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCACGCAGAATCCGGCAACAGAGGTCCTTATCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGACTACACATCTGAAAATCCCATGATGAAGGGTAGAATTTCTACCTCTGATTGTGGAATGGACGCTGTAACTGCTTTGAGAAGCAGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAACAGTCACTCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCAAAGTTGACTTTTCAGGGTATTCAACAACCACATAAAGATTTTGTTATATCTGTTCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAACGAACCCGGCATTTTTTCCAGTAGTTGTAAGAGCTGCACCAAAGCCTCAGAAAAAGTAGGTTGA 2874 0.4207 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSGNEISLRFLDAARLCNSNDNAAFGSRNSGFKGQREPLYDADFVLNHGLLNSRLKPNQQDDELVYSKPNLQCNSGDKSPSESCGSNHGGKGLDLSCTVLPNNNFKDRDSCYIETARSSELRRIDCTKSAKKSLRKNQVKPSSSMEVVGSIASNVGSPCPSGYDAFSPYSLSVGINQADDVLDNTDDGCGISFCWSKSPRFRESNLYGEIEDRPLISHRVDDETDLCVHRSMRHNGGHGISPTLETPRSLSMKFKPKSFGDLVGQNVVVRSLLSAISRGKITSFYLFYGPRGTGKTSASRIFAAALNCLSVVEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRADQVKSLVKNASIPPVSSRFKVLIIDECQLLNGETWASLSNSLENLSQHVVFVMIAPDLDKLPRSAVSRAQRFHFPKVKDADIVCRLEKICTEEGLDFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKRINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSKFSRRYTSDLQKLNNALKVLSETEKQLRISKNQTTWFTVALLQLSSVDYHSVDANDTKLSSLGGACNGGQSLEHFATGLCDNKSYRLEVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSAACLAIAKLEFHHRHHVSKAEKSWKAIASSLQFILGCSIELRITYGPGASDSKYAKLRSSFSIFGCSRRIRQQRSLSSNEQGSESDYADYTSENPMMKGRISTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETKKEGYNCAHLDPSMLDSDNNSHSNCFPKTLWLQKKFRSSYSSKLTFQGIQQPHKDFVISVPKCTCSGTYTYANEPGIFSSSCKSCTKASEKVG 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0854 957 SMART AAA_5 329 471 IPR003593 -
Aed10g0854 957 Coils Coil 600 630 - -
Aed10g0854 957 MobiDBLite consensus disorder prediction 116 135 - -
Aed10g0854 957 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 104 932 - -
Aed10g0854 957 CDD AAA 311 469 - -
Aed10g0854 957 CDD HLD_clamp_pol_III_gamma_tau 470 533 IPR045085 -
Aed10g0854 957 MobiDBLite consensus disorder prediction 802 818 - -
Aed10g0854 957 MobiDBLite consensus disorder prediction 802 823 - -
Aed10g0854 957 Gene3D - 471 534 - -
Aed10g0854 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 520 IPR027417 -
Aed10g0854 957 Gene3D - 291 468 IPR027417 -
Aed10g0854 957 MobiDBLite consensus disorder prediction 116 134 - -
Aed10g0854 957 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 104 932 - -
Aed10g0854 957 Pfam DNA polymerase III, delta subunit 313 470 - -
Aed10g0854 957 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 297 641 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Aed10g0854 957 SUPERFAMILY post-AAA+ oligomerization domain-like 534 642 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0854 Aed-Chr10 7157702 7161322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0854 288 624 Core DNA Replication Machinery Family AT1G21690 24.854 1.53e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0854 - - gmx:100812040 1630.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0854 10 7157702 7161322 Aed10g0854 10 7157702 7161322 ECH
Aed6g1378 6 18366207 18369976 Aed10g0854 10 7157702 7161322 PCT