Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0848 ATGGGAGTTTCAGAGGTAAACGGCGACGTTTTAGCATGGCTCAAATCGATGCCGGTGGCGCCGGAGTACCGCCCCACCGCGGCGGAGTTTCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCTTCAAAGTATGGAATCTGCAAAATCATCCCTCCATTCCCACCTTCATCGAGGAAAACCGCCCTGTCGAACTTCAACCGATCACTCGCGGAAACTGACTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGCAGAGCGGTGACCGCTACACTTTCAGCGAGTTCGAGTCCAAGGCCAAGTCATTCGAGAAAACATACCTCAAACGCCACTCCAAGAAGTCCTCGGGCTCGGGCCCGGGCCCGCTGGAGACTGAAACTCTGTTCTGGAAGGCCACGCTGGACAAACCTTTCTCTGTGGAATACGCGAACGACATGCCGGGCTCGGCGTTTGCCACGAAATTCCGGCGCACAGGGGATCCGAGCTCCCTTGCTGACACACCGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTGCAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCAATGGTTTACGTGGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCATGACTTGCACAGCTTGAATTACCTCCACCTTGGCTCCGGCAAGACCTGGTACGGCGTCCCTCGCGACGCCGCCGTCGCCTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTACTCTTGGTGAGAAAACTACAGTGATGTCACCTGAAGTATTAATTAGTGCAGGGGAGGCAGCGAACATTGCAACACCAGAGTGGTTGAGGATTGCTAAAGATGCTGCTATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGAGCATTGGTGCTGAACCTCGGAGTTCTCGTCTTAAAGACAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTTCAAGATGTATTGCACAACAATGATCTGCTTCATATGCTTGGGAAAGGATCTGATGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGCGTTGGATCCCGACAATCCATCAATGTAAGAAATTCTGAGGGAATGCAATCCTCAAAGGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCAAGGAATCAAGCAAGAAAAGCGTTTCTATTCTGTGAAAGACAGATTTACTACATTGTGTGAAAGGAACAGGATTTCCTCTTTCGATGTAAATGGTAACACAAGCACTTCAAGTTCTAATCCACTTCAAAGAGACAATGAAAGAGAGACTAGTCAAGGAGATGGGTTATCAGATCAGAGATTGTTTTCATGTGTAACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATAGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGATGGATGGAAAAAAATGTCCAAGAGGGTATACATGATGTTTCTGTTCAATCTACTCCTGAAAGTGAAAATGGAAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGACTCCGAGGGTGATCAGATTGCAGGTGACAGTCATGAATCAAATGTTATAAACTCTGCTTCAGAAAGTTTACTTTCTCATACTCAGGATTCCCATGCTAGTCCCATGACTGCCATTGATAGGGGAGATGATATTCCTTCAAAGAGTGCCAGTTGTGAGGATTTTATGCATCGTAGATTTGAGTGTGATTTGAGTCATCAGTCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATACAAGGACGGTGCCTAATTCCACCTCTAACTGTTCCCAAGACGCTCATGATGCTGACAGGTCATTGTCTAACAAGTCTATGGCTCCCTTTGATAATAAAAATACTTCGATGGTGCTACAATCTGATGAAGACTCGTCCAGAATGCATGTCTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGATTATCCCAAGATTGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAAGATTGCATACAGGCACGCTTCCATGGAGGATGAGGAGAGGATCCAGTTGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATGCATTTGGTTGTAGCCCTCCAGCAAGCTCACCCGTAGAGCCAAAGGTTTACCAAAGAAGGGTCAATAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAGAAAGAGATTCTGAAGATGTAGAGGATGAGAAACTCTTACTTGGGTGGATTTTACCTGATGAGAAATTTGAGAGATCAGAAAGTACCCCCAAAAGCGAAACAACTAGCAGAAAATCAGGTAAGAAAAGGAAGATGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTTGTTGCAGATAATCCAACTGAAGATAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGCATGTTGAAAGAGACCATGCAGCTTTGAAAGCAGATTATTCTCCTCCATATCATCAAAAACCTATAAGCAAGGAAGCAAACTGCACTGAAAGTGATGCAATTTCTGATGATTCACTTGATGATGATGATCACATGCAGCATAGGAGGAATGTTCATGTTGAAAGAGCTAAATTTATTGACAATGATGTTGTTTCCAATGATACAGTGGACTGTGATTCTGATTGGGAGGAAAGGGAAGAACTTAGCAGCAAGCAAGTTGAAGATACAGAGAGAGATGCAACTTCAGAGGATTCTTTGGATGTTGATTCTCTTCAGTTGCCTAGGAAGATTTCCAGAGCCAAGCATGCCAAAAACATCAGTGAAGAAGATGTAATTTCTGATGACCAAGTGGAGATTCCTCTTCAAAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCAAGGCAAATTAGAGCTGAAAATGAAGAAGCAGCACCGGAGGAATCCCAAAAGCAGGCAAGCCAAATACCCCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGGAGATATCAAAGAAGGAATCCTAAAGGCAGACCGGCCAAATGTGAAGCAGGAGAAGATGAAATGTCTGATGACCAATTGGAGGATCATTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAATGAAATGTCTGATGATCAATGGGAGGATCATTTTCTGAAGCTACCGAGAAGATTACCTAAGAGCAAGCAAAACAAACAGACAAATAAAGAAGTCATGGATGACTTAGCTGCGAATAATTCTCAATTGCTGCACAGAACTCCTAAAAGGAAGCAAGCTATATGCATGGACGAAGATGATATGAATTCAGCTGATGAAATGGAAGATGATCAGCAGCTGAGGAGAACTCTTCAAGTAAACAAGGTACACCAAAGACACTTCAACAGCTGA 3867 0.4445 MGVSEVNGDVLAWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTALSNFNRSLAETDSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHSKKSSGSGPGPLETETLFWKATLDKPFSVEYANDMPGSAFATKFRRTGDPSSLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGSGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVLISAGEAANIATPEWLRIAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASIGAEPRSSRLKDKKKGEGETVIKELFVQDVLHNNDLLHMLGKGSDVVLLPRSSVDISVCSKLRVGSRQSINVRNSEGMQSSKGFVSDDLVFNRSQGIKQEKRFYSVKDRFTTLCERNRISSFDVNGNTSTSSSNPLQRDNERETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGWMEKNVQEGIHDVSVQSTPESENGNTALALLASAYGNSSDSEGDQIAGDSHESNVINSASESLLSHTQDSHASPMTAIDRGDDIPSKSASCEDFMHRRFECDLSHQSLDHSLKKQDYNITSGVTFENTRTVPNSTSNCSQDAHDADRSLSNKSMAPFDNKNTSMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKMVAEDLGIDYMWKKIAYRHASMEDEERIQLALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGCSPPASSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAERDSEDVEDEKLLLGWILPDEKFERSESTPKSETTSRKSGKKRKMTAENGRTRKGSYAKKNVVADNPTEDKHNSQPRRILRNKKARHVERDHAALKADYSPPYHQKPISKEANCTESDAISDDSLDDDDHMQHRRNVHVERAKFIDNDVVSNDTVDCDSDWEEREELSSKQVEDTERDATSEDSLDVDSLQLPRKISRAKHAKNISEEDVISDDQVEIPLQKRQRRIPKSRQGKLELKMKKQHRRNPKSRQAKYPNEEDIASDDQLEGHYRRYQRRNPKGRPAKCEAGEDEMSDDQLEDHCQKQQTSFSRKRQNKGIDREVKNEMSDDQWEDHFLKLPRRLPKSKQNKQTNKEVMDDLAANNSQLLHRTPKRKQAICMDEDDMNSADEMEDDQQLRRTLQVNKVHQRHFNS 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0848 1288 MobiDBLite consensus disorder prediction 603 624 - -
Aed10g0848 1288 SMART JmjN_1 19 60 IPR003349 -
Aed10g0848 1288 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 294 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 669 684 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 669 701 - -
Aed10g0848 1288 SUPERFAMILY Clavaminate synthase-like 106 266 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 468 493 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 1077 1112 - -
Aed10g0848 1288 Gene3D Cupin 3 301 - -
Aed10g0848 1288 Pfam JmjC domain, hydroxylase 212 294 IPR003347 -
Aed10g0848 1288 ProSiteProfiles JmjC domain profile. 172 322 IPR003347 -
Aed10g0848 1288 Pfam jmjN domain 21 54 IPR003349 -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 1127 1204 - -
Aed10g0848 1288 SMART cupin_9 179 316 IPR003347 -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 468 484 - -
Aed10g0848 1288 PANTHER LYSINE-SPECIFIC DEMETHYLASE 294 1055 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 901 1008 - -
Aed10g0848 1288 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Aed10g0848 1288 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 294 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 1028 1204 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 1040 1061 - -
Aed10g0848 1288 MobiDBLite consensus disorder prediction 901 932 - -
Aed10g0848 1288 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 294 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0848 Aed-Chr10 7113055 7123003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0848 307 971 C2H2 Transcription Factor Family AT3G48430 46.360 3.65e-164 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed10g0848 JmjC 2.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0848 - - gmx:100775271 2222.2