Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0847 ATGGGAGTTTCTGAAGGAAACGGCGACGTTTTGCCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGCCCCACCGCGGCGGAGTTTCAAGATCCTATCGGCTACATATTCAAGATCGAGAAAGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCCTCGAGGAAAACCGCCATATCGAACTTCAACCGATCACTCGCGGAAACTGACTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGGAGAGCGGTGACCGCTACACTTTCAGCGAGTTCGAATCCAAGGCCAAGTCATTCGAGAAAACATACCTCAAACGCCACTCCAAGAAGTCCTCGGGCTCGGGCCCGGGCCCGCTGGAGACTGAAACTCTGTTCTGGAAGGCCACGCTGGACAAACCTTTCTCCGTGGAATACGCGAACGACATGCCGGGCTCGGCGTTTGCCACGAAATTCCGGCGCACAGGGGATCCGAGCTCCCTTGCGGACACACCGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTGCAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCAATGGTTTACGTGGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCATGACTTGCACAGCTTGAATTACCTCCACCTTGGCTCCGGCAAGACCTGGTACGGCGTCCCTCGCGACGCCGCCGTCGCCTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGTATAGTTGATGTTTCTAATGCTTTGAATGTATGCTGTGTAGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCTGGCATTAGTGCTGAACCTCGTAGTTCTCGTCTTAAACATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGCTACAGAACAATGATCTGCTACATCTTCTTGGGCAAGGATCTGCTGCAGTGCTTCTTCCTCGAAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCAATCAATGTAAGCAATTCTGAGGGAATACATTCCTCAAAAGGTTTTGTTTCGGATGATCTGGCATTCAACAGGAATCATGGAATCAAGCAAGTAAAAAGTTTCTATTCTGTGAAAGACAGATTTACTGCATTGTGTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGCATTTCAAGTTCTAAGCCACTTCAAAGAGACACTGAAAGAGAAACTTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGTTTCTTTAATGATTGGGTCGTTGGTTCTGGAGTATCTAACAACAAATTTACTGTTGCCCATGAAGAAGCAACTATTCCTGAGCCAAATATGTATACAGGCAGGTATTTTTGGTGCCTCTGTCTTAAGCTCATCAGGAAACATGTCTATTTATTTGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTGTTCAATCTTCCCAGGAGGCTTTAAATACTGTAACTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAACTCTTCTGACTCTGAGGAAGATCAGATTACGGCTGAGAGTCATGAATCAAATGTGATGAACTCTGCTTCAGAAAGTTTAATTTCTCATACTCGAAATTCCCATGCTAGTCCCATGAACACACTTGATATGGGAGATTATATTCCTTCAAAGAGTTCCAGTTATGAGGATTTTATACATCATAGATTAGAGTGTAATTTGAGTCACCAGTCTTTAGACCACTCTTTTAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATACAAGGACAGTGCCTAACTCCACCTCTAATTGTTCCCAAGATGCTCATGATGCCGAAAGGTCATTGTCTAACAAGTCTATGGTTCCCTTTGATAATAAAAATGCTTCAATGGTGCTACAATCTGATGAAGACTCATCCAGACTGCATGTTTTTTGTCTAGAGCACGCTGCAGAAGCAGAGCAGCAACTTAGGCCAATAGGTGGAGCCCACATATGGCTCCTATGCCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATGGATTACATGTGGAAGAATATTGAATACAGTGATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTTGATAGTGAGGAAGCTATTCCTGGGAATAGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGCGCAAGTCTTAGCCGTTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACACTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCCATAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGATTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCTCTTTTAGCAAAAAGAGATTCTGAAGATATTGAGGATGAGAAACTCCTACTTGGGTTGATATTACCTGATGAGAAAATTGAAAGATCAGAAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAAAGACAGCAGAAAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAGAAATCTACTTTCAGATAATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCTTAGAAGTAAGAAAGCCAGGCATGTTGAGAGAGACTGTGCTGCTTTGAAAGGGGATTATTCTCCATATCATCATAGAAAACCTATAAGCAATCAAACAAACTGCACTGAAAGTGATGCAGTTTCTGATGATTCGCTTGATGATGATGATAACATGCAGCATAGGAGGAATGTAAAAGTTGAAAAAGATAAATTTTTTGACAATGATGTGGTTTCAAATGATACAGTGGACTATGATTCTGATTGGCAGCAGAGGGAAGAACTTAGCAGCAAGCAAGTTGAAGATACAGAGAGAGATGCTATTTCAGAGGATTCTTTGGATGTTGGTTCTTTTCCGCTGCAAAGAAAGGCTTCCAAAGGCAAGCCTGCAAAATACATTAGTGAAGAAGATGTAATTTCTGATGACCAAATGGATAGTTGTTTTCAAAAGCAGCAAAGAAGAATTCCTAAAAGCAGGCAAGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCTAAAAATGAAGAAGCAGCACCGGAGGAATCCCAAAAGCAGGCAAGCCAAATACCCCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGGAGATATCAAAGAAGGAATCCTAAAGGCAGACCGGCCAAATGTGAAGCAGGAGAAGATGAAATGTCTGATGACCAATTGGAGGATCATTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAAGTTAAAAATGAAATGTCTGATGATCAATGGGAGGATCATTTTCTGAAGCTACCGAGAAGATTACCTAAGAGCAAGCAAAACAAACAGACAAATAAAGAAGTCATGGATGACTTAGCTGCGAATAATTCTCAATTGCTGCACAGAACTCCTAAAAGGAAGCAAGCTATATGCATGGACGAAGATGATATGAATTCAGCTGATGAAATGGAAGATGATCAGCAGCTGAGGAGAACTCTTCGAAGTAAACAAGGTACACCAAAGACACTTCAACAGCTGAAACATGCTAATTCCCTCCAAGTGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGGTCTCGGATGGTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGACTGCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATCTAGTATAGACATGGAAGAGGAGGAGGAAGGTGGACCTAGCACGCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAGCCAAGCAAACAAAAACGAAAAGGAAGAAGGTGAAGAATGCTGCAGCTACAAAGGTTTCAGTTGGCCATTCCAAAATGAAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTTCTGCATCATAAGAGAAATATCTGTCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCACGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGACCTTACGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCTAAAAAGAGTTGCCAATAG 4809 0.4375 MGVSEGNGDVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTAISNFNRSLAETDSTFTTRQQQIGFCPRRPRPVQRPVWESGDRYTFSEFESKAKSFEKTYLKRHSKKSSGSGPGPLETETLFWKATLDKPFSVEYANDMPGSAFATKFRRTGDPSSLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGSGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCSIVDVSNALNVCCVGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKHKKKGEGETVIKELFVQDVLQNNDLLHLLGQGSAAVLLPRSSVDISVCSKLRVGSQQSINVSNSEGIHSSKGFVSDDLAFNRNHGIKQVKSFYSVKDRFTALCERNRISSFDVNGNISISSSKPLQRDTERETCQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSNNKFTVAHEEATIPEPNMYTGRYFWCLCLKLIRKHVYLFGWMKKNVQDGIHDVPVQSSQEALNTVTENGNTALALLASAYGNSSDSEEDQITAESHESNVMNSASESLISHTRNSHASPMNTLDMGDYIPSKSSSYEDFIHHRLECNLSHQSLDHSFKKQDYNITSGVTFENTRTVPNSTSNCSQDAHDAERSLSNKSMVPFDNKNASMVLQSDEDSSRLHVFCLEHAAEAEQQLRPIGGAHIWLLCHPDYPKIEAEAKMVAEDLGMDYMWKNIEYSDASKEDEERIQSALDSEEAIPGNSDWAVKLGINLFYSASLSRSPLYSKQMPYNSVIYTAFGCSSPASSPIEPKVYQRRVNRQKKIVAGKWCGKVWMSNQVHPLLAKRDSEDIEDEKLLLGLILPDEKIERSESTPKSETTSRKSGKKRKKTAENGRTRKGSYAKRNLLSDNSTEDKPNSQPRRILRSKKARHVERDCAALKGDYSPYHHRKPISNQTNCTESDAVSDDSLDDDDNMQHRRNVKVEKDKFFDNDVVSNDTVDYDSDWQQREELSSKQVEDTERDAISEDSLDVGSFPLQRKASKGKPAKYISEEDVISDDQMDSCFQKQQRRIPKSRQGKYLTGKDIISDDQLELKMKKQHRRNPKSRQAKYPNEEDIASDDQLEGHYRRYQRRNPKGRPAKCEAGEDEMSDDQLEDHCQKQQTSFSRKRQNKGIDREVKNEMSDDQWEDHFLKLPRRLPKSKQNKQTNKEVMDDLAANNSQLLHRTPKRKQAICMDEDDMNSADEMEDDQQLRRTLRSKQGTPKTLQQLKHANSLQVKKQASRPIKQGSRMVVKSKAPQQIKQTAHLRNKQSNNTQESSIDMEEEEEGGPSTRLRKRATKAQESEGKLKAKQTKTKRKKVKNAAATKVSVGHSKMKDGEAEYQCDIDGCTMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKSCQ 1602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0847 1602 SMART JmjN_1 19 60 IPR003349 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1054 1068 - -
Aed10g0847 1602 Gene3D Cupin 13 343 - -
Aed10g0847 1602 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1592 - -
Aed10g0847 1602 SUPERFAMILY beta-beta-alpha zinc fingers 1482 1538 IPR036236 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1211 1300 - -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1034 1052 - -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1107 1132 - -
Aed10g0847 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1568 IPR013087 -
Aed10g0847 1602 SMART cupin_9 179 339 IPR003347 -
Aed10g0847 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1571 1595 IPR013087 -
Aed10g0847 1602 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Aed10g0847 1602 SMART c2h2final6 1486 1508 IPR013087 -
Aed10g0847 1602 SMART c2h2final6 1539 1563 IPR013087 -
Aed10g0847 1602 SMART c2h2final6 1569 1595 IPR013087 -
Aed10g0847 1602 SMART c2h2final6 1509 1533 IPR013087 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1360 1387 - -
Aed10g0847 1602 Pfam JmjC domain, hydroxylase 212 302 IPR003347 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 973 1085 - -
Aed10g0847 1602 SUPERFAMILY beta-beta-alpha zinc fingers 1525 1567 IPR036236 -
Aed10g0847 1602 SUPERFAMILY Clavaminate synthase-like 176 355 - -
Aed10g0847 1602 SUPERFAMILY beta-beta-alpha zinc fingers 1557 1591 IPR036236 -
Aed10g0847 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1569 1600 IPR013087 -
Aed10g0847 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1511 1533 IPR013087 -
Aed10g0847 1602 ProSiteProfiles JmjC domain profile. 172 339 IPR003347 -
Aed10g0847 1602 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1592 - -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1430 1454 - -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1105 1472 - -
Aed10g0847 1602 Pfam jmjN domain 21 54 IPR003349 -
Aed10g0847 1602 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1563 IPR013087 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1314 1330 - -
Aed10g0847 1602 ProSiteProfiles Zinc finger C2H2 type domain profile. 1509 1538 IPR013087 -
Aed10g0847 1602 MobiDBLite consensus disorder prediction 1397 1422 - -
Aed10g0847 1602 Gene3D Classic Zinc Finger 1537 1567 - -
Aed10g0847 1602 Gene3D Classic Zinc Finger 1568 1602 - -
Aed10g0847 1602 Gene3D Classic Zinc Finger 1509 1536 - -
Aed10g0847 1602 Gene3D Classic Zinc Finger 1454 1508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0847 Aed-Chr10 7101547 7111884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0847 786 887 C2H2 Transcription Factor Family AT5G04240 33.333 2.26e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed10g0847 JmjC 1.6e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0847 - - gmx:100775813 2713.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0847 10 7101547 7111884 Aed10g0847 10 7101547 7111884 ECH