Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0845 ATGGAGCCCTCTGAATCCGAATCAGTTGTTAGTTCCACCGCCAAGGATACGCAATTGGGTGACCCTTCTTCTTCTTCTTCACCTGTTGACCACCTCGATGACGATCCTCAGCCTTCAGATCTCAATCACGTTACCCTTACCCTTACCCCTACCCCACTTGATGATGCACTTGGTGAGGAGCTTCAGAACAAGTTGGATTTGAAGGATGGGGCTGAGACTGAGGATAAAGAACTCAATAGTTGTCAGGTGGTTGAGAGTCAAGTGATATGTTTTATGGCTATACATCTTCTGATTAGGCATAGTATTATTCAAGGTCTGGGGGGGTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGCAAAGTGTCCATCAGCATCCCCTACTTCAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAATGCCACTATTACATGCGCACTGGCTCATGTAAGTTTGGATCAAACTGCAAGTTTAATCATCCCGATCCTACAGCTGTTGGAGGAGGTGATTCTCCTTCTGGTTATGGTAATGGAAGTTCTATTTCGTTACAAGGTGTATCACAATCTTCTATACCCTCTTGGTCTTCTACTAGACCATTAAATGAATCTGCTCCTTTTGTGCCAGTATTACTTTCACCTAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTACCTACCTGAGAGAAGTCTGCATGCACCTTCAACATATGTCATGAACAACCCAGCTATTGAAACAAATGCTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAGTGCAGCTATTTCTTAAAAACTGGGGATTGTAAGTTTAAATCTAATTGCAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTTTACCTTTGAGACCGACGAAAGGCACTAAGCTAAGCCTCGACATTAGCTTTATTTCCAGCAAGGATGATAGAGATTTCAAGACCACGGCTGAAGGCTTGATTGAAGAGAAGGCGAGATTGGAAAGTTGA 1086 0.4365 MEPSESESVVSSTAKDTQLGDPSSSSSPVDHLDDDPQPSDLNHVTLTLTPTPLDDALGEELQNKLDLKDGAETEDKELNSCQVVESQVICFMAIHLLIRHSIIQGLGGCKFGKACKFNHTRAKCPSASPTSELNFLGLPIRVGEKECHYYMRTGSCKFGSNCKFNHPDPTAVGGGDSPSGYGNGSSISLQGVSQSSIPSWSSTRPLNESAPFVPVLLSPNPGVSPQSSEWNGYQAPVYLPERSLHAPSTYVMNNPAIETNAYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPTKGTKLSLDISFISSKDDRDFKTTAEGLIEEKARLES 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0845 361 SUPERFAMILY CCCH zinc finger 282 306 IPR036855 GO:0046872
Aed10g0845 361 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 104 326 - -
Aed10g0845 361 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Aed10g0845 361 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Aed10g0845 361 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Aed10g0845 361 MobiDBLite consensus disorder prediction 1 43 - -
Aed10g0845 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Aed10g0845 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Aed10g0845 361 PANTHER PROTEIN PHOSPHATASE RELATED 104 326 - -
Aed10g0845 361 Gene3D - 233 312 - -
Aed10g0845 361 Pfam RNA-binding, Nab2-type zinc finger 107 119 - -
Aed10g0845 361 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Aed10g0845 361 MobiDBLite consensus disorder prediction 1 32 - -
Aed10g0845 361 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Aed10g0845 361 Gene3D - 103 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0845 Aed-Chr10 7074636 7080725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0845 107 324 C2H2 Transcription Factor Family AT3G02830 37.069 1.41e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed10g0845 zf-CCCH 4.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0845 - - gmx:100809906 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1376 6 18350340 18356203 Aed10g0845 10 7074636 7080725 PCT