Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0793 ATGGACTGGAATTTGAAAGCACCTACTTGTTGGGATTTGGTGGATGTGGAAAAGGCAACAACAACAACCTTAATGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATGTTGGGAATTCTGGTGGCACTGAATCAGCAGCAGCACTAGCCAACAAGTCCAAAGATGCTTCTGCTATTGCAGGAGGAGTTTCAAAAATGGCATCTTCATCTTCAGGGTCTAATTCTAAGAGAGCTAGAGCCATTAACAGCACATCCTCCCTCACAGTATCATGCCTTGTTGATGGGTGCAATTCAGATCTTACCAATTGTAGAGATTACCATAGGCGCCATAAAGTGTGTGAGCTTCATTCCAAGACCCCAGAGGTCACTATTGCTGGCCTCAAACAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCACAGCCAGAAGCTCTCTCGAGACCCGGTAGTTTTTTGTCGAATTACCAAGGAACCCAATTGCTACCGTTCTCAAGTCCACACGTGTATCCTTCCAGTGGCATGGTGAGCCCAGGTTGGAGTGGTGGACTTTTGACATCCTCTGCAGATGCTAGGCTTCACAACCACAACCACCAACAAGACCTTTTTCTTGGATCTTCCCACAACAAATTAGAAGGGAAGCAGCAGCAAGCAGCAGCATTCTTACATCCAACAGTACCGTCTTTCCCATCCCCTTCTAATTCAGTGTGCCACAGTAGTACTTTTCTCAGGACCAGCCCTCTATCAGAAACCTGCGGAGTAGTAGTGAGAAGAAGCAAAATGTTCTGTGAAAGCTTAAGTAATTCACTGCATGACACTACTACTACTACTTCCTGTGCTCTCTCTCTTCTGTCATCATCATCATCACAGATCACGCAGGCACACACACCTGCACCAGGGAATAATGGCTTCAACCACCAAATGGTGCACCCGCCTAATAATAACACAATGTCCCTCATGCAGCCCTTAGGCCTCAGCTTGCAGGATAATAATAATAACAACAATGGGACTGACCATTGTTCCTCCATGTATAGCTTGGCCTCTGATCATGGATCCCACTGCAGTGAAGCCCCACAACTCTTTCCCTTTCAATGGGAATAG 1209 0.4557 MDWNLKAPTCWDLVDVEKATTTTLMEEQNRFGVYRMKGEFSVDLKLGHVGNSGGTESAAALANKSKDASAIAGGVSKMASSSSGSNSKRARAINSTSSLTVSCLVDGCNSDLTNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEALSRPGSFLSNYQGTQLLPFSSPHVYPSSGMVSPGWSGGLLTSSADARLHNHNHQQDLFLGSSHNKLEGKQQQAAAFLHPTVPSFPSPSNSVCHSSTFLRTSPLSETCGVVVRRSKMFCESLSNSLHDTTTTTSCALSLLSSSSSQITQAHTPAPGNNGFNHQMVHPPNNNTMSLMQPLGLSLQDNNNNNNGTDHCSSMYSLASDHGSHCSEAPQLFPFQWE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0793 402 Pfam SBP domain 103 176 IPR004333 GO:0003677
Aed10g0793 402 Gene3D - 94 164 IPR036893 GO:0003677|GO:0005634
Aed10g0793 402 ProSiteProfiles Zinc finger SBP-type profile. 100 177 IPR004333 GO:0003677
Aed10g0793 402 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 402 IPR044817 GO:0003677
Aed10g0793 402 SUPERFAMILY SBT domain 101 182 IPR036893 GO:0003677|GO:0005634
Aed10g0793 402 MobiDBLite consensus disorder prediction 165 187 - -
Aed10g0793 402 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 27 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0793 Aed-Chr10 6583621 6587861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0793 1 402 SBP-box Gene Family AT5G50670 37.408 2.68e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed10g0793 SBP 8.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0793 - - gmx:100787407 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2246 5 24406847 24409263 Aed10g0793 10 6583621 6587861 PCT