Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0775 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTCGACCCTGCATTCTTCCCCAACAACAACAACTTAAACACTACCCCTTCTCCTCACACTCACTTTCAAGTACTCCTCCCTCAGGAAACAACAGCATCTTTTGATAATGTCACAAACCATGAGACTAGCTGTGTTGACCAAAGCTCCAACAAGATCACCATCAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGCCCTCAGTCCTCCATGGTTGTTGACAAGCTTGAATCCGGGGAGCAGGTCACTCAGAAGCTCAACAGCACTGCTCTTGATCAGAAGAAAAGGAGAACCAGAAATAATGGATCTTCCTTTACCACTAACCCCCAATCCAAGGATGCTGCAGCAGAAGGGAAGAACAAGAAACAAAGGAAGAGCAACAACAATGGTGGGGTGAAAGAAGAGGAGAAGCAGGCAAAAGAAGAGAAGAAGGATCAGAGAAAGTGTCTTGAAGAGCCTCCAACTGGCTATATCCACGTCAGAGCAAGAAGGGGCCAGGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAGATAAGCGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGACGAAATCATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCAGTGAATCCCATGTTTTATGACTTGGCAACGGACATAGACACCCTCTTGGTTAGACCAGAGAAATTAAATAGCATGACATCACCATCACCATCACCACCACTACCATCTGTGTCACATTGCAACAGCCCCAACCACCAAGCCACAACTTTTGCTGATACTACAACCACCATGAACCCCACCAACATCTTCCACACTGCTAATGACTATCTTTTGGATAACTCAGTCTCGTTTTTTCTTCAAGGGCAGAGGTCAAATATGTTCTCTGAGGAGGATGCCGGTAGTCATTTCTGGGACGAAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1086 0.4503 MAAFSYQYHPFLVDPAFFPNNNNLNTTPSPHTHFQVLLPQETTASFDNVTNHETSCVDQSSNKITISDNEPSVTKNLSPQSSMVVDKLESGEQVTQKLNSTALDQKKRRTRNNGSSFTTNPQSKDAAAEGKNKKQRKSNNNGGVKEEEKQAKEEKKDQRKCLEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDIDTLLVRPEKLNSMTSPSPSPPLPSVSHCNSPNHQATTFADTTTTMNPTNIFHTANDYLLDNSVSFFLQGQRSNMFSEEDAGSHFWDEEDQRQKFLHPYGFSNNLCSFH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0775 361 CDD bHLH_AtBPE_like 168 253 - -
Aed10g0775 361 MobiDBLite consensus disorder prediction 53 186 - -
Aed10g0775 361 MobiDBLite consensus disorder prediction 112 126 - -
Aed10g0775 361 MobiDBLite consensus disorder prediction 264 286 - -
Aed10g0775 361 Coils Coil 144 164 - -
Aed10g0775 361 Gene3D - 175 248 IPR036638 GO:0046983
Aed10g0775 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983
Aed10g0775 361 SMART finulus 184 234 IPR011598 GO:0046983
Aed10g0775 361 Pfam Helix-loop-helix DNA-binding domain 182 229 IPR011598 GO:0046983
Aed10g0775 361 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 361 IPR024097 GO:0006355
Aed10g0775 361 MobiDBLite consensus disorder prediction 53 101 - -
Aed10g0775 361 MobiDBLite consensus disorder prediction 127 186 - -
Aed10g0775 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 245 IPR036638 GO:0046983
Aed10g0775 361 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0775 Aed-Chr10 6395482 6398278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0775 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.554 2.08e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0775 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0775 - - gmx:100796018 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0775 10 6395482 6398278 Aed10g0775 10 6395482 6398278 ECH