Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0769 ATGATGTCGAGAATAAACAACAGCAGCGTTGGTGGCTGGATGGACGAACGAGAAGACGAAAACTCCGCCGCCTCAGCTTCCTGGCCCAGAAACAACTCCAAGACCAACAACAACATCAACATCAACATCATCACCGAGACAACAAACACAGGTTTCGTCGAAAACACAGACATAGCTTCTCTCTGCGCCTTCAAGCCCATGCTCGACGTCGACGAGGAATGGTATAACAACATCACCACCAACAACAACCACCACCACCACCACCACCAAGACATGACCTTCGACCCCGACAACCTCTTACTCCACGCCGTCGACTCCTCCTCCTCATGCTCCCCCTCTCAGCTCCAGTACTTTCTCCCTCCTCCCAACCCAAAACCCCAACTTCTCATCAACCCCTTCGATGTGGGATTTCTTGACCCTCAAGCTTCTTCCTCCTCTCTACCCCTTCTCCCCTCCGAAACGCACTTCACGCCGCCTCAGTGCACCACCGCCGCCTTCGCCGGTTTCCAGAGCCTACAGGAGGGTGGCTCCACCAAGCCTCTGTTTCTGAACCGTTCCAAGATTCTGAGGCCCCTGGAGTCACTGCCCCCCTCCGGGACGCAACCCACGCTGTTTCAGAAGAGAGCCGCGCTGAGAAAGAACAACATGGGCGAAGGGAGTGACAAGAAGAGGAAGGAGAAAAAGGAGAATGAGATGATGATGATGGATGATTTGAGTTTCGATGATGGCTCCGCCTTGAACTATGACTCTGATGACTTAACCGTGGATGAGGGTAATGCGAAGAATGGTGGCGGTGGTGGGGTTAGTTCCAATGCGAACAGCACCGTCACCGGTTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCAGCTAAGAATTTGATGGCGGAACGACGCCGTAGGAAGAAGCTCAATGACAGACTCTACATGCTGAGGTCCGTTGTTCCTAAAATTAGCAAAGTTGAGGTTCGGCTGCGAGAAGGAAGAGCGGTTAACATCCACATGTTTTGTGCCCGCAAACCTGGTCTGTTACTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCTGAGCAATGCAGAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGCCAACAATGGCATGATGTAA 1212 0.514 MMSRINNSSVGGWMDEREDENSAASASWPRNNSKTNNNININIITETTNTGFVENTDIASLCAFKPMLDVDEEWYNNITTNNNHHHHHHQDMTFDPDNLLLHAVDSSSSCSPSQLQYFLPPPNPKPQLLINPFDVGFLDPQASSSSLPLLPSETHFTPPQCTTAAFAGFQSLQEGGSTKPLFLNRSKILRPLESLPPSGTQPTLFQKRAALRKNNMGEGSDKKRKEKKENEMMMMDDLSFDDGSALNYDSDDLTVDEGNAKNGGGGGVSSNANSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCREGQDVHPEQIKAVLLDSAANNGMM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0769 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 321 IPR036638 GO:0046983
Aed10g0769 403 MobiDBLite consensus disorder prediction 1 35 - -
Aed10g0769 403 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 319 403 - -
Aed10g0769 403 MobiDBLite consensus disorder prediction 254 288 - -
Aed10g0769 403 PANTHER BHLH TRANSCRIPTIONAL FACTOR 67 319 - -
Aed10g0769 403 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 67 319 - -
Aed10g0769 403 Gene3D - 281 397 IPR036638 GO:0046983
Aed10g0769 403 MobiDBLite consensus disorder prediction 264 280 - -
Aed10g0769 403 CDD ACT_UUR-ACR-like 332 392 - -
Aed10g0769 403 PANTHER BHLH TRANSCRIPTIONAL FACTOR 319 403 - -
Aed10g0769 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 353 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0769 Aed-Chr10 6315420 6318993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0769 318 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 84.746 1.83e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g0769 HLH 0.00024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0769 - - gmx:100217332 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0769 10 6315420 6318993 Aed5g2215 5 24202238 24204016 ECH
Aed10g0769 10 6315420 6318993 Aed10g0769 10 6315420 6318993 ECH
Aed5g2215 5 24202238 24204016 Aed10g0769 10 6315420 6318993 PCT