Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0766 ATGGATTTCTCAAAACTCAACGACTCGCCCATGTTCCGGCAACAGCTCCAGTGCATGGAAGAGGGTTCAGAGTCGTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGATTGGAGAGGCATATGATGGAGACGTTGCATTTGCGAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTCATGACCAAATTTGCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAGGCAGAGCACATTCTGAATGACCAGTTGCTAAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGACGTTTTGATAAAGCTTCTCTTGTCCATGATCAGGCACGTGAGAAGTTCATGTCATTGAGAAAAAGCACTAAAATGGATGTTGCCACTGTTGTAGAAGAGGAATTGCACAATACAAGAACCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTCTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAACAATTACATGAGCTGGAGCCTTTCATTATCGAGATTTTGGCTTATACACAAAAAGCAAGAGAAAGTTACAACGATGAGCAAATTACTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCTTTGAGTGGCCCTTATGGCTCTCCCGGTAGAGATGGTCAAGTGCAACCTTTTTCAAGGATATCAAATAAAGTAGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATTTCTTGCAAAACGGTCCACAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGACAGTCGCGGAACGCTTTACTACTTTCGCAAACCATGGAATGGATTAAATCAGAGTGGCAATCAATCATCTTTACACAGAAATTGTGCCACTGAAAATAGTGCTGGAATTTTGAGTCGCCTGCTTTCTTCACATAACCATGGAATAATCCCTGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGACAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCAGAAAATGCCGTGGACCAGATGGATTGGATTGAAAAGATAACTGGTGTAATTTCCTCCTTATTGAGTGCACAAACACTGACAGATGACTCAGAAAGCGGTGACAATTACTGGGGCAACAAGGTTTATTGGTTAAAAGGTTCTTCAGATGATGATCATGCAGTGAGTGAAAAGCCAATTGAGGTTCTTAGAAAGGTTGGTGGCAATGACAAATGTGCTGATTGTGATAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATTCTTATATGCATTGAATGTTCTGGTATTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTAAAAGTATGGGATTCTGCTGTCATAACCATGTTTCAGTCACTGGGAAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGATGCATGCAACAGTTGCTTCGCAAACTGATGACACTCCTGATGGTTCATCCAAGACACACAAAAAGCTATTTCATGCAAGAAAACCATCACCCGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGCGAAAGTCTTTGTTCGCCAGATAACGAATAACAACTGTCTCCATTCAACGGCACAACAGGTGGCAAAAAGCATCTGTGCCAATGACAAGAAAGCAGTGTACAGACACATTGTGAAGTCAGATGTAGATGTCAATGCTGTTAGTGGGGAAGCAGGCTTTTCTTCCAACATCCCTTCTTCATCAACATGTGAAAGTAAAACAAAACCAGTGGAGGACATACAAGATGGTTCTAGTGTGCTTCATCTGGCATGCGTAACTAGTGATGCTGCAATGGTAGAGCTGCTCCTACAGTATGGGGCAGATGTAAATGCTATTGATTCTAAAGGGAGGACACCACTACATTATTGCATCAAGAGAGGGGAGAATGCAGCTGCAAAAGTGCTTATTACAAGGGGGGCCAATCCACTTGCGGTAGACAGAGAAGGCAACACTCCTTATAAGTCTGCACCAGAATCTGACAAAGATACTGTTGGTAAAGATACTCTTGCTCAAAATCAGAAAATGACATGCCTTCATTATTTAATAGAAAAATGA 2334 0.4139 MDFSKLNDSPMFRQQLQCMEEGSESLRSRCFKFYKGCRKYTEGIGEAYDGDVAFASALESFGGGHSDPLFVTLGGPVMTKFAIALREISTYKELLRSQAEHILNDQLLNMLNVDILDVKEARRRFDKASLVHDQAREKFMSLRKSTKMDVATVVEEELHNTRTSFEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQQLHELEPFIIEILAYTQKARESYNDEQITLCERMLEYKKHVHHESMLSLSGPYGSPGRDGQVQPFSRISNKVADAVTESAENGKVQIIRQGFLAKRSTNLRGDWKRRYFVLDSRGTLYYFRKPWNGLNQSGNQSSLHRNCATENSAGILSRLLSSHNHGIIPDEKSVARHTVNLLTSTIKIDAEQTDLRFCFRIISPSKSYTLQAENAVDQMDWIEKITGVISSLLSAQTLTDDSESGDNYWGNKVYWLKGSSDDDHAVSEKPIEVLRKVGGNDKCADCDKPDPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDSAVITMFQSLGNLFANSVWEELMHATVASQTDDTPDGSSKTHKKLFHARKPSPDDPISLKERFIHAKYAAKVFVRQITNNNCLHSTAQQVAKSICANDKKAVYRHIVKSDVDVNAVSGEAGFSSNIPSSSTCESKTKPVEDIQDGSSVLHLACVTSDAAMVELLLQYGADVNAIDSKGRTPLHYCIKRGENAAAKVLITRGANPLAVDREGNTPYKSAPESDKDTVGKDTLAQNQKMTCLHYLIEK 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0766 777 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Aed10g0766 777 CDD BAR_SFC_plant 15 215 IPR035670 -
Aed10g0766 777 ProSiteProfiles Ankyrin repeat profile. 675 707 IPR002110 GO:0005515
Aed10g0766 777 ProSiteProfiles Ankyrin repeat region circular profile. 675 706 - -
Aed10g0766 777 CDD ArfGap 471 599 - -
Aed10g0766 777 PRINTS HIV Rev interacting protein signature 480 499 IPR001164 GO:0005096
Aed10g0766 777 PRINTS HIV Rev interacting protein signature 522 543 IPR001164 GO:0005096
Aed10g0766 777 PRINTS HIV Rev interacting protein signature 499 516 IPR001164 GO:0005096
Aed10g0766 777 SMART ANK_2a 609 646 IPR002110 GO:0005515
Aed10g0766 777 SMART ANK_2a 708 737 IPR002110 GO:0005515
Aed10g0766 777 SMART ANK_2a 675 704 IPR002110 GO:0005515
Aed10g0766 777 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
Aed10g0766 777 SMART PH_update 294 432 IPR001849 -
Aed10g0766 777 SUPERFAMILY Ankyrin repeat 625 751 IPR036770 -
Aed10g0766 777 MobiDBLite consensus disorder prediction 567 584 - -
Aed10g0766 777 Pfam Putative GTPase activating protein for Arf 470 605 IPR001164 GO:0005096
Aed10g0766 777 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Aed10g0766 777 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 457 764 - -
Aed10g0766 777 PANTHER CENTAURIN/ARF 1 440 IPR045258 GO:0005096
Aed10g0766 777 SMART arf_gap_3 468 612 IPR001164 GO:0005096
Aed10g0766 777 MobiDBLite consensus disorder prediction 560 584 - -
Aed10g0766 777 Coils Coil 118 138 - -
Aed10g0766 777 Gene3D - 285 446 IPR011993 -
Aed10g0766 777 Gene3D - 610 765 IPR036770 -
Aed10g0766 777 Pfam PH domain 295 429 IPR001849 -
Aed10g0766 777 Gene3D Arf GTPase activating protein 454 609 IPR038508 -
Aed10g0766 777 ProSiteProfiles Ankyrin repeat region circular profile. 708 734 - -
Aed10g0766 777 Pfam BAR domain of APPL family 6 233 - -
Aed10g0766 777 CDD PH_ACAP 296 434 - -
Aed10g0766 777 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Aed10g0766 777 ProSiteProfiles PH domain profile. 293 430 IPR001849 -
Aed10g0766 777 Pfam Ankyrin repeats (3 copies) 671 736 IPR002110 GO:0005515
Aed10g0766 777 SUPERFAMILY PH domain-like 294 445 - -
Aed10g0766 777 SUPERFAMILY ArfGap/RecO-like zinc finger 468 606 IPR037278 -
Aed10g0766 777 ProSiteProfiles ARF GTPase-activating proteins domain profile. 468 612 IPR001164 GO:0005096
Aed10g0766 777 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 440 - -
Aed10g0766 777 PANTHER CENTAURIN/ARF 457 764 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0766 Aed-Chr10 6285370 6292304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0766 480 606 C2H2 Transcription Factor Family AT4G21160 42.188 1.71e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0766 K12489 - gmx:100797073 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0766 10 6285370 6292304 Aed5g2213 5 24168856 24181078 ECH
Aed10g0766 10 6285370 6292304 Aed10g0766 10 6285370 6292304 ECH
Aed5g2213 5 24168856 24181078 Aed10g0766 10 6285370 6292304 PCT