Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0763 ATGCCTTCTGAAATAATGGAGAAGAGGGGCGTTTCTGCCTCAACCCGCTTCTTGGGTGACATTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAGATCTATTCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCGGCATCTAATGGCAGCATTTTTAATACTTCGTCACCCCTTGAAACAAATGCAAAAACAGGCTTGTCAATGTCTCAGACTAGTCTATCTCAGGAAATTACAGAAGACCTACATTGTGGCAGAGAAGCAGGCAATATAGAGATGCTGAAGGATTCCAAGAGATCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTGTTTTCAAGCTCATTGTCTGATATGTTTACCCATAAGTTGAGGTTATTGGGGAATGGAGTGCTATCTGATCAATGTATTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTATAAATCTCTTGAAGAAATGGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCAGGAGTCACTGATGAGTTAGGATGCAGTACACGCACTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAGCATCTAATTTCTGGAAAAAGAACCAGTTGTGGGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTCAACAATCTTCCAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGCGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCGGAGAAGGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTTTTGAATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACAATTGAATCATGTCAAATTTATCGAATTTTGTGATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTCGAGCCTGGTCTTCCCAAGATTGCAACATGTATGATTGAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTGAGTGACAACATATCATCAAGACATAAGGCAGGAGCATCCTCTGGATTTATTGCATCTGGTGGCAGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCAACACAGCTACCTGCTTTTATTGATAACTCACTGTTTCATGTGAATTCTGGCATTCACAAGACCACAAGAGGAGCATCTACTGGGAAAGTATCTGGTGCTTTTGAGGCCAGTAATGCTATTGATGCAATGAAATTTGCATCCGTTTCTAGGTTCCATCCTCATTCTTTACCTGAATATCGTGAAAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCGACGGAATCATCTGACAGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACCTAGCAGAATTTAATGCAGGAGGAAATGGAAACCGCCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAGCTTGCAGCAGCAACCTCCTTCAAATGCCATGCTTTGGCCGAAAACACCATCCTTTGTTAATGGTGCTTGTTCTCCATGTCTTCCACAGATGCCCAGCTTTCCTAGAACTCCACCTCATGTACTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCAGGCTTTCATGGTAACTGGCAGTTGCATTGTCCTGCTTCTCACAGTATATTCTCTCATGTTGGTGGAAATGGTACGGAATTGGCGTCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAGACTTCCCATGACTTTGGTTTCTAAATTTGATTCTACTAATGAACGAATGAGAAACCTCTATCCTCGTAAAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATTTGAACTTGACCTAGGCCGCATTTTGCGTGGGGATGACAACCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTTGTGCCATAGATGAACAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGGACTTGCTAAACAAATGTAATGTTGGCTATGCATTCATCAATATGACCGATCCTGGTCAAATTATTCCATTCTACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCGGTACTTGCCTATGCCCGAATTCAAGGAAAAACTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCCTTGGGTAATAATATTAGAGTGAGGCCTGGAAAATCTCGCATTAATGGTAACGAGGAGAATCGCACCCAAGGGAATCCTTCATCTTTGGCAAGTGGCGAAGAGTCTGGGAGTGCAATAGAATCTTCATCATCAAGCTCTTCAAAAAATTCTGACTGA 2919 0.4152 MPSEIMEKRGVSASTRFLGDISYASEKNIGLRKPRSIHDHFLQGKSEMAASNGSIFNTSSPLETNAKTGLSMSQTSLSQEITEDLHCGREAGNIEMLKDSKRSWSNVHRQPASSSYGLIGSKIVTNAASRESSLFSSSLSDMFTHKLRLLGNGVLSDQCITVGSLPEEEPYKSLEEMEAETIGNLLPDEDDLFSGVTDELGCSTRTRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPDYFGVSKGKIPFGQQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIREIYEYPQLNHVKFIEFCDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMIEQSQKGQDEPDLGHSLSDNISSRHKAGASSGFIASGGSLENGYNQGFHSATQLPAFIDNSLFHVNSGIHKTTRGASTGKVSGAFEASNAIDAMKFASVSRFHPHSLPEYRESLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGMSSTGNLAEFNAGGNGNRPHHGLYHMWNGSSLQQQPPSNAMLWPKTPSFVNGACSPCLPQMPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDASGFRLGSVGSPGFHGNWQLHCPASHSIFSHVGGNGTELASNAGQGSPKQLSHVFPGRLPMTLVSKFDSTNERMRNLYPRKSEPNTNNNADKKQFELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLCAIDEQCRGTYDFLYLPIDFKASIYLDLLNKCNVGYAFINMTDPGQIIPFYKAFNGKKWEKFNSEKVAVLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRINGNEENRTQGNPSSLASGEESGSAIESSSSSSSKNSD 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0763 972 Gene3D - 256 345 IPR012677 -
Aed10g0763 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 336 IPR000504 GO:0003723
Aed10g0763 972 MobiDBLite consensus disorder prediction 937 972 - -
Aed10g0763 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 329 IPR000504 GO:0003723
Aed10g0763 972 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 415 IPR000504 GO:0003723
Aed10g0763 972 SUPERFAMILY RNA-binding domain, RBD 789 881 IPR035979 GO:0003676
Aed10g0763 972 SMART rrm1_1 264 332 IPR000504 GO:0003723
Aed10g0763 972 SMART rrm1_1 349 417 IPR000504 GO:0003723
Aed10g0763 972 Pfam RNA recognition motif 2 787 891 IPR007201 -
Aed10g0763 972 CDD RRM3_MEI2_like 790 883 IPR034454 -
Aed10g0763 972 CDD RRM1_MEI2_like 262 337 IPR034453 -
Aed10g0763 972 Gene3D - 346 446 IPR012677 -
Aed10g0763 972 SUPERFAMILY RNA-binding domain, RBD 261 420 IPR035979 GO:0003676
Aed10g0763 972 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 421 IPR000504 GO:0003723
Aed10g0763 972 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 968 - -
Aed10g0763 972 MobiDBLite consensus disorder prediction 906 972 - -
Aed10g0763 972 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0763 Aed-Chr10 6249078 6257523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0763 258 414 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 3.64e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0763 - - gmx:100797616 1729.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0763 10 6249078 6257523 Aed5g2209 5 24144239 24152306 ECH
Aed10g0763 10 6249078 6257523 Aed10g0763 10 6249078 6257523 ECH