Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0729 ATGGGTAGATCCCCTTGTTGCGAGAAAGAACATACTAACAAAGGAGCTTGGACCAAAGAAGAAGACGAACGCCTCATCAACTACATCAAGCTCCACGGTGAAGGCTGTTGGAGATCCCTCCCCAAAGCCGCTGGCTTGCTCAGATGTGGCAAGAGTTGCAGGCTCCGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGCAACTTCACTGAAGACGAAGACGAACTCATCATCAACCTCCACAGCTTACTTGGAAACAAATGGTCTCTTATAGCTGCAAGGCTACCGGGAAGAACCGACAACGAAATCAAAAACTACTGGAACACTCACATCAAGAGAAAACTCTACAGCCGCGGAATCGACCCACAAACCCATCGTCCACTCAACGCCGCTACTCCTCCGCCAACCACCACCGCCGCAGCACTTGCATCTGCTAACACCAACAAGAACATAAACAGCATTAGCATTATCAGCACCAGCACCAGCACCAACAACAACACACATGATATTAACAACGACAACAACAACAATAACAGTTTTCAGTTGGTGACTATGACTGATACGAACACGAAGATAACTGGAATCGACATGGTTGCCGAAGATTCCAACAGCAGCAGCGGCGTTACAACAGAAGAATCATCATCATTCCCTCAGCATCAACTCAACTTGGACCTTTCCATTGGGCTTATTCCCTCGGCGAACCCAGAAAAGTTGAAACCATCACCTCAAGCGCTAGCGCCAGAACACGATGATGATCAAAAGCCACAGGTTTTGTATCAGTGGTATGGCCAACAAGGTGTGTGTCTGTGTTACACTCTAGGGCTTCAAACCAACCAAGCTTGTTATTGCAAAACCATGGCTGCTGCTGCTACGGTTACTACTACAACTGCCACCGATACTAATCATCTATATAGATTTTACAGACCCATGAATATTTAA 942 0.466 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAATPPPTTTAAALASANTNKNINSISIISTSTSTNNNTHDINNDNNNNNSFQLVTMTDTNTKITGIDMVAEDSNSSSGVTTEESSSFPQHQLNLDLSIGLIPSANPEKLKPSPQALAPEHDDDQKPQVLYQWYGQQGVCLCYTLGLQTNQACYCKTMAAAATVTTTTATDTNHLYRFYRPMNI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0729 313 CDD SANT 69 112 IPR001005 -
Aed10g0729 313 MobiDBLite consensus disorder prediction 234 253 - -
Aed10g0729 313 CDD SANT 16 61 IPR001005 -
Aed10g0729 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed10g0729 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed10g0729 313 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Aed10g0729 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed10g0729 313 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 243 - -
Aed10g0729 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aed10g0729 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed10g0729 313 Gene3D - 14 66 - -
Aed10g0729 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed10g0729 313 SMART sant 13 63 IPR001005 -
Aed10g0729 313 SMART sant 66 114 IPR001005 -
Aed10g0729 313 Gene3D - 68 133 - -
Aed10g0729 313 PANTHER TRANSCRIPTION FACTOR MYB7 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0729 Aed-Chr10 5975027 5976711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0729 1 307 MYB Transcription Factor Family AT4G38620 46.906 1.82e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g0729 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0729 K09422 - gmx:778033 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0729 10 5975027 5976711 Aed10g0729 10 5975027 5976711 ECH