Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0701 ATGGGAGACGGCAGCGGCAGCGGCAGCAACCGGTCGAAGCCGGAGTGGTTGAAGCAGTATGATCTGATAGGGAAGATCGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTCAAACCAATCGCGGAAAATCTATCGCCATCAAAAAATTCAAGCAATCCAAGGATGGCGACGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTGAGGGAGATAACGCACGAGAATCTTGTGAAGCTTGTGAATGTTCACATTAATCATATGGACATGTCTCTGTATCTGGCTTTTGATTATGCAGAACACGACCTCTATGAAATAATAAGGCATCATAGGGACAAAGTCAACCAATCCATTAACCAGTATACTGTTAGATCGTTACTCTGGCAGCTGCTCAATGGACTAAACTATCTACACAGTTTCTATGAACAGGTCATGGGTGAAGGAGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATTTGATAATGGGGTTGTTGTAACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACTAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACATTAAAGCCGCTATTCCAAGGTGGAGAAGTTAAAGCTACACCAAACCCTTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGTGGACATTGTTACTGTGCCAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCACAATGTATACAAGGACGCAAATATGACAACGCTAGCCTTCATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCTTAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGACATTTGTGAATTATCCCACGCGTCCAGTGGATACAGCAACAGATTTTGAAGGGACAGCCAACATGCAACCTTCACAGCTGGTTTCATCTGGAGCTGCAGTTTCGGGCAGCATGCCTGGTGGTCATGCATTGAATAGATCTGTCCCTCGGCCAATGAATGCTGGTGGCATGCAGAGAATACCTCATCCAGCAATGCAGGGTTATAATCTCTCATCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCATCCCAATGCAGCGAGGTGTTCCACAGCAACAGGTGTAG 1326 0.457 MGDGSGSGSNRSKPEWLKQYDLIGKIGEGTYGLVFLARIKSQTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENLVKLVNVHINHMDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVRSLLWQLLNGLNYLHSFYEQVMGEGEEHGVVKIADFGLARIYQAPLKPLFDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGGEVKATPNPFQLDQLDKIFKVLVDIVTVPGHPTLEKWPSLANLPHWQQDSQCIQGRKYDNASLHSVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQPGETFVNYPTRPVDTATDFEGTANMQPSQLVSSGAAVSGSMPGGHALNRSVPRPMNAGGMQRIPHPAMQGYNLSSQAGMGGGMNPGGIPMQRGVPQQQV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0701 441 PANTHER CELL DIVISION PROTEIN KINASE 8 440 - -
Aed10g0701 441 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 440 - -
Aed10g0701 441 Pfam Protein kinase domain 20 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0701 441 CDD STKc_CDK8_like 19 327 - -
Aed10g0701 441 Gene3D Transferase(Phosphotransferase) domain 1 105 340 - -
Aed10g0701 441 SUPERFAMILY Protein kinase-like (PK-like) 15 328 IPR011009 -
Aed10g0701 441 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Aed10g0701 441 ProSiteProfiles Protein kinase domain profile. 20 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0701 441 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0701 Aed-Chr10 5703256 5709550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0701 1 438 Core Cell Cycle Gene Families AT5G63610 70.241 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Aed10g0701 Pkinase 3.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0701 K02208 - gmx:100813433 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0701 10 5703256 5709550 Aed10g0701 10 5703256 5709550 ECH