Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0679 ATGTCTGGAAAAGCGAAGAGAAGAGACGATGACGGTGCTTCCGACGCCGATTCTGAAGGCCACGCGCCGCCGCCCAAGAAGTCCCTCAAGAAGGACTCCGACGAAGATCCCGACACTGTCATCGTCTGCGAGATTTCGAAGAACAGAAGGGTTTCCGTGAGGAACTGGCAAGGCAAGACTATGGTTGACATTCGTGAGTTTTACATCAAAGATGGCAAGCAAATGCCTGGCAAGAAAGGTATCTCATTGACCATGGATCAGTGGAACATTCTTCGTGAACATGTTGAAGAAATTGACAAGGCAGTTGGTGAGAATTCTTAG 321 0.4891 MSGKAKRRDDDGASDADSEGHAPPPKKSLKKDSDEDPDTVIVCEISKNRRVSVRNWQGKTMVDIREFYIKDGKQMPGKKGISLTMDQWNILREHVEEIDKAVGENS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0679 106 PANTHER BNAC09G47220D PROTEIN 1 104 - -
Aed10g0679 106 MobiDBLite consensus disorder prediction 1 38 - -
Aed10g0679 106 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 103 IPR009044 GO:0003677|GO:0006355
Aed10g0679 106 Gene3D Transcriptional Coactivator Pc4; Chain A 30 106 IPR009044 GO:0003677|GO:0006355
Aed10g0679 106 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 104 IPR045125 GO:0003713|GO:0060261
Aed10g0679 106 Pfam Transcriptional Coactivator p15 (PC4) 43 94 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0679 Aed-Chr10 5556103 5558536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Aed10g0679 PC4 5.8e-26 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0679 K25815 - gmx:100820368 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0679 10 5556103 5558536 Aed10g0679 10 5556103 5558536 ECH