Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0674 ATGAGCAAAAACGCCTCCCGGAAGCGCGCGGCGCCGCCTTCGCAACCCCCGCCGGCGAAGCAAGCCGTAATGACTCAGGAAGAAGATTTCATGGACGAAGACGTGTTCATAAACGAAACCCTCGTTTCCGAGGACGAAGACTCCCTCATTCTCCGCGACATCGAGCAGCGCCAGGCCCTTGCCAACCGCCTCTCCAAGTGGACCCGTCCTCCTCTTTCCGCCGACTACGTCGCCCAGTCTCGTAGCGTCGTTTTTCAGCAGCTGGAGATTGATTACGTCATTGGAGAGAGTCACAAGGAGTTGCTGCCGAACTCGTCTGGACCTGCCGCCATTATCAGAATATTTGGAGTTACAAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAACTCTTGAGGGAAGGATGAGAGAAGCCAATAAAAACAGTCATGTGAGAAATTTTGTTTGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAACAATCCAATTCCCAACCCTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGGTGGTCTGGGAACGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGTTTCATGATTGATTGCAGCATAGTTGGCGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAAACTGCGAAAAGCTTGTCTTACTGTCAGTTAGAGTTTGATTGCTTGTATTCCGAATTGATTAGTCATGCTCCAGAAGGGGGATATTCAAAGATGGCTCCGTTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCATTAATTCGTAATGTGATGACCCTCAACTCATGTTCTCCTATCGTTGGTGTTGATGTGATATCTTTTGATACAGAAAAAGAAGTCCTGCTTGCTTGGAGGGATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCTGCAAAGCTGGGCATAGTAGACTTTCCAATTCTGGGTCGTATTAGGAACAGTAGAGTTCGAGTAAAGGAAACAACTTTCTCATCAAGGCAGTTAGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGATTTACTACAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTACTGTTTAAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTCATGTACAATTATGTAGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAGACAGAAGAATCTGGTCATTCCTAATGCCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATATTATGAGAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGCTCGCAAGCTCAATATCCCTCCAGAGTCTGTGAACAGAACTCCATCTGGTGAAACATTTGTGAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTAGAGAAGGCAGTGCTAGATGGTAGACAGCTAGCCCTGAAAATTAGTGCAAATTCTGTGTATGGGTTCACAGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACAAAAAAACTTGTGGAAGATAAATTTACGACACTTAATGGCTATGAACACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGAAGTAAAAGAGGCTATGAACTTGGGGAGAGAAGCTGCGGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGCATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAATTATTGATTGACAGGGACATTCCTGGTGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGATTTATCACTTCTTGGTTTAACGAAGACAGGAGATGACTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCATATGTTATTGTTAAAGCTGCAAAGGGTGCGAAGGCATATGAGAGATCAGAGGATCCTATCTATGTGCTAGAAAACAGCATACCAATAGATCCTCATTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATTTTTGAGCCAATTCTAAAGAATGCTAGCAAAGAACTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCGTCAAACTGTGGCATATTGAAATTTACTAAGAAACAGCTTACCTGCATTGCAATGGTCATCACACTCTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTGTACTGTAAAACAGTATCCCAAGTGTCTGATCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGATTGCCAAGGTTCACTGCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATAGACGAAAAAAGGCACAGAAAGATATGGCTGAAGCAAAGTTGCAATTGGACCGTTGGAGCTTCTAAGTTTTGCCAAGGAAAACCTCTGGAGATGATTCCTAGTCCTACCTACGACAAGCTTGCTCTTGTGACCGTATTTCTGTTCTATTCCTGGCAAAGAGCGAGCCTATTTGTTGCATGGTCATGTAGGTTCACATATGATATTGCGAAATTTGGTTCATGTGCAGAATTTGACCTCGTCTGCGGATCTCCGAAGCCCAGAATTTGCTAA 3360 0.4241 MSKNASRKRAAPPSQPPPAKQAVMTQEEDFMDEDVFINETLVSEDEDSLILRDIEQRQALANRLSKWTRPPLSADYVAQSRSVVFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANKNSHVRNFVCRIEMVQRRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRGIQLGGLGTKSFLTYESNVLFALRFMIDCSIVGGNWIEIPAGKYKKTAKSLSYCQLEFDCLYSELISHAPEGGYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVISFDTEKEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAKLGIVDFPILGRIRNSRVRVKETTFSSRQLGTRESKEVTVEGRVQFDLLQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFMYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNAKQAGSEQGTFEGATVLEARAGYYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSEVKEAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKLLIDRDIPGAVQYVKNAISDLLMNRMDLSLLGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENSIPIDPHYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNCGILKFTKKQLTCIAMVITLSVHIAKEGKLSCTVKQYPKCLIWRCFLGGCGHSVRIAKVHCIRMFSAQVGIVQFFIDEKRHRKIWLKQSCNWTVGASKFCQGKPLEMIPSPTYDKLALVTVFLFYSWQRASLFVAWSCRFTYDIAKFGSCAEFDLVCGSPKPRIC 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0674 1119 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 989 - -
Aed10g0674 1119 Gene3D - 789 940 IPR042087 -
Aed10g0674 1119 CDD DNA_polB_delta_exo 288 493 - -
Aed10g0674 1119 Pfam DNA polymerase family B, exonuclease domain 118 445 IPR006133 -
Aed10g0674 1119 Gene3D Helix hairpin bin 616 668 - -
Aed10g0674 1119 TIGRFAM pol2: DNA polymerase (pol2) 521 928 - -
Aed10g0674 1119 Gene3D - 446 544 IPR036397 GO:0003676
Aed10g0674 1119 Gene3D - 295 445 IPR036397 GO:0003676
Aed10g0674 1119 Gene3D Palm domain of DNA polymerase 545 772 IPR023211 -
Aed10g0674 1119 MobiDBLite consensus disorder prediction 1 24 - -
Aed10g0674 1119 Pfam DNA polymerase family B 501 930 IPR006134 GO:0000166|GO:0003677
Aed10g0674 1119 PRINTS DNA-directed DNA-polymerase family B signature 713 721 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed10g0674 1119 PRINTS DNA-directed DNA-polymerase family B signature 560 573 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed10g0674 1119 PRINTS DNA-directed DNA-polymerase family B signature 652 664 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aed10g0674 1119 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 989 - -
Aed10g0674 1119 Gene3D DNA Polymerase, chain B, domain 1 88 264 - -
Aed10g0674 1119 CDD POLBc_delta 542 931 - -
Aed10g0674 1119 SUPERFAMILY Ribonuclease H-like 109 507 IPR012337 -
Aed10g0674 1119 SUPERFAMILY DNA/RNA polymerases 526 932 IPR043502 -
Aed10g0674 1119 ProSitePatterns DNA polymerase family B signature. 715 723 IPR017964 GO:0000166|GO:0003676
Aed10g0674 1119 SMART polmehr3 292 727 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0674 Aed-Chr10 5494520 5508476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0674 5 975 Core DNA Replication Machinery Family AT5G63960 78.018 0.0 1640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0674 K02327 - gmx:548092 1919.05