Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0667 ATGAACGAAGGCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTGACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTGACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTCGGTGGTAACTCTGCTGCCACTATTGATTATTTATCTGCACTAAAGCACACCCTTCAATCACCCCAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTCCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGCTTCCACCAACTCAGTTTCTTGCCACTGCTTTTGGAACTAGTTTTTGGTACTCAGCAGTTCTCAAAAATTCAAAACATGGACTTCACTGAGCTAGCACTTTCTTGCATTCTAAAGTTGTTGCCTTTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCCAAGTTAGCAACGTTTTTGCTACTATTTGAAAAGGGAACAAGTTCGGTTAAGACTAGTCTTTGCCATCTTATAGATTCAACTGCATCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCACAAACTAGTGCATGAGATTGTTGTGCTTGTTCTCCAAGGTTGTGAGGCTTCCAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACCGAGAGAATTTAGTGACAGCAGGAGCAATTGATGGGGTTATAACATACATTTCAGGTTGTGAAATACGGCAGACGAACGTGGCTCCATTGGGGATGGCAATAATAAAGAAGCTTCTGGTGCTGGAGAGTGCTAAAGAGGCTTTGGTGAATCACCCTAATGGGGTTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGCAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATTCTTGCAATTGTTTGTGGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGGGCTGGAGTTTTGACTCAGTTACTGTTTCTTCTGCAGAGTCAGTGTGGCACCAAAACTAAAACAAAGGCTAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGATTGAGGAACCAAAACAAGTGTAG 1191 0.4307 MNEGQIEITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFGGNSAATIDYLSALKHTLQSPQLENKLQALEKIRVLSDEYCSFRKSCFHQLSFLPLLLELVFGTQQFSKIQNMDFTELALSCILKLLPFVSLEPLNMIKDESKLATFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCHMLGHSHKLVHEIVVLVLQGCEASKVAIKAMLALCSLQSNRENLVTAGAIDGVITYISGCEIRQTNVAPLGMAIIKKLLVLESAKEALVNHPNGVETLVKMVFRVCNQECSESAVGILAIVCGDFGRAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0667 396 PANTHER OS02G0542800 PROTEIN 9 388 - -
Aed10g0667 396 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Aed10g0667 396 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Aed10g0667 396 SUPERFAMILY RING/U-box 5 78 - -
Aed10g0667 396 CDD RING-Ubox_PUB 14 56 IPR045210 -
Aed10g0667 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Aed10g0667 396 Gene3D - 88 388 IPR011989 -
Aed10g0667 396 PANTHER WDSAM1 PROTEIN 9 388 IPR045185 GO:0061630
Aed10g0667 396 SUPERFAMILY ARM repeat 91 372 IPR016024 -
Aed10g0667 396 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0667 Aed-Chr10 5393250 5394440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0667 8 389 U-box Gene Family AT3G19380 32.763 4.11e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0667 - - gmx:100815247 704.516