Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0663 TTGGAAAGAGGTAGCAGCAGCAATAATGGTAAGAGAAAGAAAGGTTGCAGAAGAGGACATTGGAGACCCTCTCAAGATGAGAGACTTAAGCAACTTGTGAAACAATATGGTCCCCAAAACTGGAACTTTATCTCACAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTACAATCAACTAGCCCCAAACATCATAAAAAAGCCATTCACAGATGAAGATGAAGAAAAGCTTCTAGCACTTCACAAAGTGAAGGGAAACAAATGGGCTGCAATAACCAAATTCTTCCCTGGAAAAACTGACAATGCTGTCAAGAATCACTTCCATGTATTAATGGCCAGAAGGAAGAGGGAGCGTTTGGCACTGTTTGGTGACACATTTCGTAGTCCTAATAATAATTCTTCAATTAACTTTAACTTGCGAAAATACTATAAAAGCGAGGGAATGTTTGGTGCCTATGCCTCACTACAGAAACCAACAACTCCCTGGACTCCATTCAGTGGTGGATCTTCAACCATCACATCAAGTTTTAATATTGTTTCTAATTCTTTTGTGTCTTCAAGTGCAAAAGAGAAAACTTTGTTTGATTTGGACCATTTTTCTTCACCTGTAATTAGTAAATCTTCTTCTATTCTTGGAAATTACCACAGTTTCACTGCCCCAGGACTTCCTATTGTTGGCAAAGTTGTTACCCTTCCGCACAAATTTTCAAACTATAGTTATTACGACCACAAAACTATGGACTCAATCAAAAGTTGCAAAAGAGGTAAACATATTCCACGTGAAAGCTCCACTAGCAATGAGCAAAAACAACTTCAAACTGATCTTAATCTCAAGCAAAAGGGTGTTGTTTCCTTCATAGACTTTCTTGGAGTGGGAACTTCTTCTACCCATGATCATGACAATTGA 918 0.3824 LERGSSSNNGKRKKGCRRGHWRPSQDERLKQLVKQYGPQNWNFISQHLEGRSGKSCRLRWYNQLAPNIIKKPFTDEDEEKLLALHKVKGNKWAAITKFFPGKTDNAVKNHFHVLMARRKRERLALFGDTFRSPNNNSSINFNLRKYYKSEGMFGAYASLQKPTTPWTPFSGGSSTITSSFNIVSNSFVSSSAKEKTLFDLDHFSSPVISKSSSILGNYHSFTAPGLPIVGKVVTLPHKFSNYSYYDHKTMDSIKSCKRGKHIPRESSTSNEQKQLQTDLNLKQKGVVSFIDFLGVGTSSTHDHDN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0663 305 CDD SANT 21 62 IPR001005 -
Aed10g0663 305 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Aed10g0663 305 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Aed10g0663 305 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Aed10g0663 305 CDD SANT 72 115 IPR001005 -
Aed10g0663 305 PANTHER MYB TRANSCRIPTION FACTOR 4 298 - -
Aed10g0663 305 PANTHER MYB PROTEIN-RELATED 4 298 - -
Aed10g0663 305 SMART sant 69 117 IPR001005 -
Aed10g0663 305 SMART sant 17 66 IPR001005 -
Aed10g0663 305 Gene3D - 71 138 - -
Aed10g0663 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Aed10g0663 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Aed10g0663 305 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Aed10g0663 305 Gene3D - 18 70 - -
Aed10g0663 305 MobiDBLite consensus disorder prediction 1 22 - -
Aed10g0663 305 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Aed10g0663 305 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0663 Aed-Chr10 5378941 5379968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0663 1 299 MYB Transcription Factor Family AT4G33450 41.584 3.71e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed10g0663 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0663 K09422 - rcu:8263076 210.305