Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0661 ATGAATCTCTCTTATCTCACTCGCTTCCCCGAACGTCTTGTTGCTCCTCTTTGTGCCACAGTTCCCACTACCACTACCACTAGGGGCAATAGAGCGGAGAATTTTGCAATTGAAGGGCGTGATCTGAAATTCTCATTTGCGACGACGACGACTACGAGGCAAACGCAGGATGTACCGGTTCTTAAGGATTGTTCTATTCGCATCCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGGTATACTATTATCAGAATTCAGAAGTAAGAGTTATTGTCTTGCAATGTAACCCTGAGCATAGTGTGCAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGGACAGTGTACGTGAATGGACCTAAAAGTTTCGTTTTCCAAAATCCAGATCACCAGGTGGTAATGCCTACTGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGACTAATGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGTCTGTCTGATTACATGAAGAGATCTGTCCAGACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCAGAAGCTTGTAAAATTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAACTGATCAGGTCGGGGTTATCAAAGCTGTTAGGAACTCTGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTTGTCATTCATGGAGATGCTGCAAGCATTAGGAGTTTCATTGAAGCCAGGCAAGCTGCCTATATTACCCAGATTAATACTTAA 882 0.4456 MNLSYLTRFPERLVAPLCATVPTTTTTRGNRAENFAIEGRDLKFSFATTTTTRQTQDVPVLKDCSIRIPCGQFWMLLGPNGCGKSTLLKVYYYQNSEVRVIVLQCNPEHSVQILAGLLTPTSGTVYVNGPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLTNDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKILLLDELTTFLDETDQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVIHGDAASIRSFIEARQAAYITQINT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0661 293 Pfam ABC transporter 61 92 IPR003439 GO:0005524
Aed10g0661 293 ProSitePatterns ABC transporters family signature. 189 203 IPR017871 GO:0005524
Aed10g0661 293 CDD ABC_cobalt_CbiO_domain1 38 266 IPR015856 GO:0005524|GO:0016020|GO:0055085
Aed10g0661 293 Pfam ABC transporter 112 216 IPR003439 GO:0005524
Aed10g0661 293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 289 IPR003439 GO:0005524
Aed10g0661 293 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 90 - -
Aed10g0661 293 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 112 292 - -
Aed10g0661 293 SMART AAA_5 70 266 IPR003593 -
Aed10g0661 293 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 112 292 - -
Aed10g0661 293 Gene3D - 25 291 IPR027417 -
Aed10g0661 293 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 26 90 - -
Aed10g0661 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 272 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0661 Aed-Chr10 5352128 5355634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0661 20 271 Calmodulin-binding Proteins AT2G36910 26.296 1.03e-15 75.9