Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0649 ATGATGATAGAGTCTAGGTTTTTGGTGATTTATTTGTTTTTGTTAATTCAGAGAAGACTGCTTTTGTTGAAAAGAAGCATTACGGTTTGGGCAAGTCAAATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACAATCCTGATTTTTCACCTGATGATAGTAAGCAATTTCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCCTGGCATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGACAATATTATGAATAAAGACTATCGAGATTTGGATGCAACAATGGAATGGGACGAGGATGAAAGTTACGACAATAAAATGTCTCCTGGGTTGGAGGGATGGAAACATAAGAGACATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCAGCCAGGAGTAGTCGAAGCAGGAGCCCTCCTCATGGTCTTAGGTGGGATTCAGGATTGAACGACAGAAATAGAATGCGGGCTGGAGGATCAACACAACCATGTAGAGATTTTTCTGCTGGTAAATGCAGAAGAGGCAGCCACTGCCATTTTCTTCATCATGATAATCAAATTCATGAGGATAGTTGGGAAGATAAGTACAGGGAAGATGAAGCCCCCAGATATTCTGCTCCCCATGAGGGTAGAGACTATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATGAATTTTGCAAAAGGCAGGTGCAGAAATGGACCGTCATGCAAGTTTGTGCATCATAACAATTCTGATGGACACAATAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGACAATTCTTTTGAGCAGGGTGGCGGGCATGGACCAAACCGTAGTGGTGATACGCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGGAAGCAATCCTGGGGGAGATTATCATATGCTGGATAGACAGAAATTGAGTGATTCAGTTAGTCCTAATAGGAGACCAAGGGATGGTAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGCGGAATGATATAGTTCCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAACGTGGGTGCTGCAGAGCAAGGATTCACTCCCTTGCCTACGAGGGATGGATGGGGTCATAGTCTGGATAAGAGCAGAGTGCATGGTGAACAGCCATTTTCAAGTGATAAGAAGGAAGCTGATAGTTGGATAGCAGGAAATACTGCTGCCAACATGCACAGTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGAGATCTTCCGGTTGTATTGAAGAAAAGCATGAACAAAATAAGCATGGGATAACACAGGGTTTTATGTATTTAGCCTCCTCTGAACAGGACAGAATACAAATTGCTCCAGGACAAGGTTTTAATCAGAATGTGGAGAGTTTGAATCCTTTGCATTCTTCAAGCTGCCAAGCTGTTGGACAAAGTCAAGTAGCAGTTCCCATTCTACCTCCGAAGAGTGGAATTGATGGTATGCTGAACCAGGAAGTCTCTATTGATAATAAGTACACTGCTGAGCCAAATATCATGGATGCAGGCTTATCCCAAGTTAGTTCAAGAAATCCTCCTCCAACTGAGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCGCTGGCTCATATCCTTGGGACAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCACGATGCAAAGGACACATCCTCCCCAGCAAAAATTGAGGTGCCTGCTATGCATGTTTCCAATACATTCATCAGGCCAGATCCTGCGGTTGGACTTCTGAAGCAGTATGATCCAATGAGTGACAGTGTTGAGCCAAAGAGTGCTATTGCAAGTGGGGTGCCCCCAGCCATTCCTCCAAGTAAAAAAGCTGCTGAAGATGTAGTGGAAATTCTGTCACAGTTGTCCAACACAGCAAGACAAAATTGTGGGGATACTTCCAAGGCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAGCCAGGTATAGTTTCTAGTCTGTTCTGCCGATCTGTTTGCAACAGGGAGAACTAA 2250 0.436 MMIESRFLVIYLFLLIQRRLLLLKRSITVWASQMSGSGKKRSSKWDLRDNPDFSPDDSKQFRSGWSSAGDKLKPGMGFSSKEPFSGGRGSNKDNIMNKDYRDLDATMEWDEDESYDNKMSPGLEGWKHKRHSQSPKNGWSRSARSSRSRSPPHGLRWDSGLNDRNRMRAGGSTQPCRDFSAGKCRRGSHCHFLHHDNQIHEDSWEDKYREDEAPRYSAPHEGRDYSLKSGRSNEACMNFAKGRCRNGPSCKFVHHNNSDGHNKVSVDELTREREIDRRHRDNSFEQGGGHGPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWGSNPGGDYHMLDRQKLSDSVSPNRRPRDGRWGSDGNKADADKVWDSPKRNDIVPVSDTAKLVEDKSENVGAAEQGFTPLPTRDGWGHSLDKSRVHGEQPFSSDKKEADSWIAGNTAANMHSSQSIGTDIWLGDDAKMSPDWDYRVRSSGCIEEKHEQNKHGITQGFMYLASSEQDRIQIAPGQGFNQNVESLNPLHSSSCQAVGQSQVAVPILPPKSGIDGMLNQEVSIDNKYTAEPNIMDAGLSQVSSRNPPPTENVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKDTSSPAKIEVPAMHVSNTFIRPDPAVGLLKQYDPMSDSVEPKSAIASGVPPAIPPSKKAAEDVVEILSQLSNTARQNCGDTSKAAGSEELVKSDPLIQLQPGIVSSLFCRSVCNREN 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0649 749 MobiDBLite consensus disorder prediction 256 296 - -
Aed10g0649 749 MobiDBLite consensus disorder prediction 112 175 - -
Aed10g0649 749 MobiDBLite consensus disorder prediction 36 96 - -
Aed10g0649 749 Gene3D - 290 349 - -
Aed10g0649 749 MobiDBLite consensus disorder prediction 112 131 - -
Aed10g0649 749 MobiDBLite consensus disorder prediction 41 56 - -
Aed10g0649 749 SMART c3hfinal6 294 320 IPR000571 GO:0046872
Aed10g0649 749 SMART c3hfinal6 170 196 IPR000571 GO:0046872
Aed10g0649 749 SMART c3hfinal6 231 256 IPR000571 GO:0046872
Aed10g0649 749 MobiDBLite consensus disorder prediction 256 285 - -
Aed10g0649 749 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Aed10g0649 749 MobiDBLite consensus disorder prediction 398 420 - -
Aed10g0649 749 Gene3D - 167 269 - -
Aed10g0649 749 ProSiteProfiles Zinc finger C3H1-type profile. 294 321 IPR000571 GO:0046872
Aed10g0649 749 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 34 734 - -
Aed10g0649 749 ProSiteProfiles Zinc finger C3H1-type profile. 170 197 IPR000571 GO:0046872
Aed10g0649 749 SUPERFAMILY CCCH zinc finger 296 319 IPR036855 GO:0046872
Aed10g0649 749 MobiDBLite consensus disorder prediction 325 386 - -
Aed10g0649 749 Pfam CCCH-type zinc finger 299 319 IPR041367 -
Aed10g0649 749 MobiDBLite consensus disorder prediction 346 383 - -
Aed10g0649 749 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 255 IPR000571 GO:0046872
Aed10g0649 749 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 195 IPR000571 GO:0046872
Aed10g0649 749 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 34 734 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed10g0649 zf-CCCH 4.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0649 - K22909 gmx:100783856 1296.18