Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0643 ATGCTGATCTCTGATGAAAGAGATAGTGATGTGTTCTTTGACTCAGTGGATTGTTTCTCACCAACCCAAGAAGACTCTGCTTTGACAGAACAAGAGTTTGGTTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGAAGGAAAGAAGAGAAAGGTTTTTGCAGGGGATGATGGGGTTGGGTGATGGTGATGGATCTTCCAAGCTTTGTTCTCAAGAGAATAATAGTATCATGAGTTCTGATGATTCATCATCACCAGTGAGATTCAGGGATAGTGGGGCAGTTTCAAATGCTTCTTCTAGTTGTTGTATTTTGCCTGATGAACACAAGGGATGCCCCAAAGATGAGGTTTCTTGTACAGATCAAGAGGTTAGAGATAGAAAAGCCGAGGGTTTTGATATGGTTGAAAAGGAGAAGAAAAGCTGGTGGAAGCACTTTATAAGCAGCAAAGTCAGATCAAAATTGAATTCAGCGACAACAAATAAGACTCGAAGAGTAAATGTAAGGCAGAATAAGAAGAGGTGGACGGAGTTAAGTGCAGTGTATATTGGACAAGAGATTAGAGCTCACATAGGCCTAATTTGGACTATGAAGTTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGTGAAGATGGTGTCATTCGCATATGGCGTGTAAAATCACTGAATACGTCTAGTATCTGCTTCAATGCAGAAGAAGACAGTGCAGCTAGCAAAGTGAAACAAGACTTCTCTTGTTCTCGGAGGAAACAACACTCAAGCCAATCCTCCTTCGTCGTTCTTCCAAATAAGATTTTCAGAATCGAGGAATCACCATTGCATGAATTTTATGGTCATGAAAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATACTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGAAAATCGGTTCTAATCAATGTCTAAGAGTATTCCATCACAAAGACTATGTGACTTGTATTCAATTCAACCCCGTTGATGAAAACTACTTCATCAGTGGTTCCATAGATGGCAAAGTCCGAATATGGGGAATACATGAAGAACGAGTCGTTGACTGGGCAGACATAAGAGATGTGATCAGTGCTATAAGTTACCGGCCGGATGGAAAAGGGTTTGTAGTCGGTTCCATCACAGGCACTTGCCGCTTTTATGTCGCCTCAGGCAAAGATTTCCAGCTTGAGACGAAGATTCGAGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGGTTACATCTGAAGATTCCAAAGTCAGAATATTGGAAGGCATCGAACTTGTTCAGACATATAAAGGGCTTCCAAGATCCGGAAGTCAGATGTCAGGTTCATTTACCTCTGGTGGAGAACATATAATTTCAGTTGGAGGAGACTCTCGTGTGTATATTTGGAACTTCAATGACTTGGGAAATGCTTCTTCCAAAAGTACAAAATCCAATTATTCCTGTGAGCACTTTGGCTCTGAGGGGGTTACTGTTGCATTACCTTGGTCTGGCATGAGTGCAGAACAAAGTGGCTCCTCTTCCAATGATTTTGCACACTATTCTTCTTCTTCTTCTTCACAACACCAACTAGAGGCTGCTCATGGTGTTAGGGAGTCAGAGCGTTTTTCTTTTGGAAGTTGGTTCTCCATCGATGGCACGTGCCGAGGATCGGTCACATGGCCCGAGGAGAAGCTTCCCAGCTGGGATCTACCTCTTGCAGAAGCTGAATTTGATCACCAGAAGCTATGTGCTGCCAAAGATCCTTCCAATGAAAAACATGTGTCAGAAACATGGGGACTGTCCATGGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCCATTAGGCTTTAG 1911 0.4254 MLISDERDSDVFFDSVDCFSPTQEDSALTEQEFGYEIWVNEPVSVKERRERFLQGMMGLGDGDGSSKLCSQENNSIMSSDDSSSPVRFRDSGAVSNASSSCCILPDEHKGCPKDEVSCTDQEVRDRKAEGFDMVEKEKKSWWKHFISSKVRSKLNSATTNKTRRVNVRQNKKRWTELSAVYIGQEIRAHIGLIWTMKFSPNGQYLASGGEDGVIRIWRVKSLNTSSICFNAEEDSAASKVKQDFSCSRRKQHSSQSSFVVLPNKIFRIEESPLHEFYGHESDVLDLAWSNSDTLLSSSMDKTVRLWKIGSNQCLRVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKGFVVGSITGTCRFYVASGKDFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMVTSEDSKVRILEGIELVQTYKGLPRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDLGNASSKSTKSNYSCEHFGSEGVTVALPWSGMSAEQSGSSSNDFAHYSSSSSSQHQLEAAHGVRESERFSFGSWFSIDGTCRGSVTWPEEKLPSWDLPLAEAEFDHQKLCAAKDPSNEKHVSETWGLSMVAAGCDGTIKTFHNFGLPIRL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0643 636 SUPERFAMILY WD40 repeat-like 184 486 IPR036322 GO:0005515
Aed10g0643 636 PANTHER WD REPEAT DOMAIN 44 128 636 IPR040324 -
Aed10g0643 636 Pfam WD domain, G-beta repeat 185 217 IPR001680 GO:0005515
Aed10g0643 636 Pfam WD domain, G-beta repeat 271 307 IPR001680 GO:0005515
Aed10g0643 636 Pfam WD domain, G-beta repeat 312 348 IPR001680 GO:0005515
Aed10g0643 636 PANTHER WD REPEAT DOMAIN 44 1 100 IPR040324 -
Aed10g0643 636 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 100 - -
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 316 IPR001680 GO:0005515
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 358 IPR001680 GO:0005515
Aed10g0643 636 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Aed10g0643 636 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Aed10g0643 636 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Aed10g0643 636 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 128 636 - -
Aed10g0643 636 SMART WD40_4 179 218 IPR001680 GO:0005515
Aed10g0643 636 SMART WD40_4 351 390 IPR001680 GO:0005515
Aed10g0643 636 SMART WD40_4 405 441 IPR001680 GO:0005515
Aed10g0643 636 SMART WD40_4 442 483 IPR001680 GO:0005515
Aed10g0643 636 SMART WD40_4 269 307 IPR001680 GO:0005515
Aed10g0643 636 SMART WD40_4 310 349 IPR001680 GO:0005515
Aed10g0643 636 Gene3D - 170 511 IPR015943 GO:0005515
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Aed10g0643 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0643 Aed-Chr10 5177750 5181793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0643 187 372 Eukaryotic Initiation Factors Gene Family AT2G46280 24.020 3.75e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0643 K20241 - gmx:100780979 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2107 5 23415546 23419624 Aed10g0643 10 5177750 5181793 PCT