Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0628 ATGAGGCCTCTTCTCCGAACGAACCAGCACCTGCACGCGCTTCGCATGGGGCTTCAGGCGCGTGAGTTGTCATCGTCATCTCGAAACGTAAAGGTTTCAGTGTGGTGGGATTTTGAGAACTGCCAGGTGCCGGTGGGAATCGAAGCGTTGGATGTGGCCCCGGCAATCACGAAGGCCGTGAGAGCGAATGGGATCAAAGGCCCTCTTCGAATCAACGCTTTCGGCGACGTTCTCCTCTTCTCCAAAGCCAACCTGCAGGCACTTGCTCTCACCGGCATTCATTTCACCCACGTTCCCGGTGGAAAGAACAGTGCTGATAGATTTCTTCTTCTCGATCTTATGGATTGGGTTTCTCAAAATCCCCCGCCTGCACATCTGTTTCTCATATCTGGTGATTCCGACTTTGCTGGAATATTACACCGTTTAAGAATGAATAATTACAATATATTGCTTGCTAGCCTGGGGAATGCTTCCGATGTCCTCTGCAGTGCAGCAACTATAGTATGGCAATGGCCTTCATTAGTAAGGGGGCAATGTCTTTCTGGAAAACATTTTAACCATCCTCCTGATGCTTTGCTTGGTTCATGGTATGGAAATTATAGGCTGGTTGTTGAAAAGCCGTTCTCAGATGTTGAGCAGTCTACATCTTTGCGAAAAGTGGATATTTGTGAACTTTCCTTAGATAAACATACTGTTCTAAAAGCAATTGTAAGACAGATTTGGTGTATATTGAGATCACATCCGAAAGGAATCACAATTGGAGATCTTCGTAAAGAGTTGTTGAATCGTGATGTGCATTTTAGTAGAAGTTTTTATGGATACAGAAGCTTTTCTCGCATTCTATCAGCAACTCGACATGTAGAGCTCAAGAATTTAGGTGATGGTAATTTTCTTGTATATCTGATCCCCTCAGAATCCCCCAAACCTTTTGAGGGCAATGCTGTAGAACCAATAACATCTTTTATTAAAATTGATGAGAGTGGATCTGCAGCAACTCCAAAGCTAAATGGTGAGGATAAAGATAAGGCTAGAAAAGCAAATGAGACACCCTTAACTGCCTCGTCTCATGAAAGGATTATGGATGATAATTCAAAATCATTCCAACCAGTCACTTCACAAGTCAAACCCATGGGAGAAAATGTAGATGCTAAATCGTCAATTTCATTGGTTGAAAGATGTGTACCTCAGCCCCCAAATGAGTTGCAGAAATCTTCTCTGTGTAGTGGGAAGGTTGTAGATATCACTACTGCACAACTGTCAAAGATTCAAACACAACTCAAGGACAACCAACTTTCCAAACCTAAGCCAGATTCCTTAAAACTGAGTTCTAAAAGCTCATCTGATGATTACATTGAAGCTCATCTGACTTCAAGGAATCACTCTGCTGGAAATGATCAGACAGTGGTGGAAGACATTGGTACTGCAAACTATGAATTTGGAAATTTTAGAGCAACGGGCAAATATGTGAATCCAACTAGAAAGGAGGTTGATAAAAAACCTGGCGGAAGTGATGAAACTTGTAGAAAAGGTCCAACATTCTTTGGTTGGACCAGAAGGTGGTGGCAATTTTGGGAAGGCAATGCAAAATCTGGTGATTCAACTGCTCATCAGAACAAGGTGGTTAGTCATTTTGAGGATTCTAATGCATCTGAACTAGTGGACGAGACAGTCCAGAGTGTTAGTGATTTTGAAGAACTCAAGTCATCAGAACTGGACCAGAGTGTTATTTGTTCTGGAAAGCCTGAGTTGTTTTCTAGCGGTTCCTTTTGGAGTGACATGGAATCTTTTATTTTCTCCCTCAAAGGATCACTTGTTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACAAGAGTATGGACCCCCGGTTTTTAGATCTCTCATTGAAAAAGATATCCTTCATTTGGTGAAGTTATTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCCCTCCAAAACATTTCCTTTTAGGCTAACTCAACTAGTTCACAAAAACTCATTGTTTGGACAATCTCATGGTGCAAATGGCTTGAGTTCTCTCTTTCTGAGCAGCGCCTCACAGTCCACATTGCAAAAAGCATCTGAACATGATGTAGAGAAACACAGTAAGAGTATTCCTCATACTAGAGTTTCTGCAACTGCCACTGAGACGAAATATACAGAGAGGTCTAGGAATGACATATTAAAAGATTATCAGAAACTTGTGAATGAGATACTGAGGGAACACCCAAACGGTTACAGTATCAGTTCTTTCCCAAGACTTTTTGTTGATAGGTATGGCTATCATCTTGATTTGCAGAAGCTTGGTTACCAAAATTTGGCAACCTTACTACAGATAATGCCAGAAGTTTATGTAGAGTCCACTTATATTTATCCTTCTATTCCTGCTGTTAGTGCTTCTGAAGGGAAAACTTTTAATATCGAAACTCAAGTAGCTCATGCAATCTCAAACTCATAG 2466 0.4136 MRPLLRTNQHLHALRMGLQARELSSSSRNVKVSVWWDFENCQVPVGIEALDVAPAITKAVRANGIKGPLRINAFGDVLLFSKANLQALALTGIHFTHVPGGKNSADRFLLLDLMDWVSQNPPPAHLFLISGDSDFAGILHRLRMNNYNILLASLGNASDVLCSAATIVWQWPSLVRGQCLSGKHFNHPPDALLGSWYGNYRLVVEKPFSDVEQSTSLRKVDICELSLDKHTVLKAIVRQIWCILRSHPKGITIGDLRKELLNRDVHFSRSFYGYRSFSRILSATRHVELKNLGDGNFLVYLIPSESPKPFEGNAVEPITSFIKIDESGSAATPKLNGEDKDKARKANETPLTASSHERIMDDNSKSFQPVTSQVKPMGENVDAKSSISLVERCVPQPPNELQKSSLCSGKVVDITTAQLSKIQTQLKDNQLSKPKPDSLKLSSKSSSDDYIEAHLTSRNHSAGNDQTVVEDIGTANYEFGNFRATGKYVNPTRKEVDKKPGGSDETCRKGPTFFGWTRRWWQFWEGNAKSGDSTAHQNKVVSHFEDSNASELVDETVQSVSDFEELKSSELDQSVICSGKPELFSSGSFWSDMESFIFSLKGSLVVSQSKNREDMAHKLQEYGPPVFRSLIEKDILHLVKLLISEKKWLEESPSKTFPFRLTQLVHKNSLFGQSHGANGLSSLFLSSASQSTLQKASEHDVEKHSKSIPHTRVSATATETKYTERSRNDILKDYQKLVNEILREHPNGYSISSFPRLFVDRYGYHLDLQKLGYQNLATLLQIMPEVYVESTYIYPSIPAVSASEGKTFNIETQVAHAISNS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0628 821 ProSiteProfiles OST-type HTH domain profile. 730 804 IPR025605 -
Aed10g0628 821 Gene3D - 225 307 IPR041966 -
Aed10g0628 821 MobiDBLite consensus disorder prediction 425 446 - -
Aed10g0628 821 Pfam NYN domain 31 165 IPR021139 GO:0004540
Aed10g0628 821 PANTHER EMB|CAB71880.1 21 805 - -
Aed10g0628 821 MobiDBLite consensus disorder prediction 330 356 - -
Aed10g0628 821 CDD PIN_limkain_b1_N_like 31 153 - -
Aed10g0628 821 Gene3D - 725 793 IPR041966 -
Aed10g0628 821 Pfam OST-HTH/LOTUS domain 238 296 IPR025605 -
Aed10g0628 821 Pfam OST-HTH/LOTUS domain 735 787 IPR025605 -
Aed10g0628 821 ProSiteProfiles OST-type HTH domain profile. 232 303 IPR025605 -
Aed10g0628 821 CDD LOTUS 731 786 - -
Aed10g0628 821 PANTHER LIMKAIN B LKAP 21 805 IPR024768 GO:0005777|GO:0010468|GO:1903231
Aed10g0628 821 Pfam OST-HTH Associated domain 611 660 IPR025677 -
Aed10g0628 821 Gene3D - 24 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0628 Aed-Chr10 5063653 5067324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0628 30 177 C2H2 Transcription Factor Family AT5G61190 44.966 4.80e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0628 - - ccaj:109796744 1104.74