Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0627 ATGGATTTGGACGATTTCCGATCCATATTGGACACCGCCGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGACGTCGCCTCCGCCGATTCCGCCGCCGATTTGAAGCACCGCCGCGACGCCATCGTCGAGCGCCTATACGCCGCCACGGCAGCGCCTCCGCGCTGCCGGACTTGCGACGACGACGGCCCTCGCCTCAACGGCCACCAAATCAAGAAGCAGAACAGCCCCAGTCCAAGCCCCGAAAGGCAACCGCAGCAACGCCGCGCCGCCGCCGCCGCTTCCCCTGCCACGCCGCAGTCTCACGAAAACGACGACGTAGAAGACGGCGAGGATGTAGATCCTTACGGCGGCTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAGCCTTGCCGACATGGATCTTACATTCCAAGCGTTGAAGGAGACTGACATCGGGAGGCACGTGAATCGTTTACGGAAGCATCCTTCAAACGACGTTCGCCGATTGGTGAAGCTGCTTGTCAGGAAATGGAAGGAAATTGTGGATGAGTGGGTGAACTTGAAACCACAGGGAGGAAGCAACACTCGGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCATCAGCAGATTCCTGATTTTGCATACTCGCCCAATCCACACAATGGGAGCTCAGGGTCTGAGCGTAACAACTCAGAAGCAGAACACAAACCGAAAGTAGTTCCACGTAGTGAACCACGGCCAAAACCGGCGCCATCACCTTCAGTTTCAACCCCTGCTTCGGCTACTCAAAACAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCCGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAATTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1071 0.5444 MDLDDFRSILDTAGVDVWMFIDAAIDVASADSAADLKHRRDAIVERLYAATAAPPRCRTCDDDGPRLNGHQIKKQNSPSPSPERQPQQRRAAAAASPATPQSHENDDVEDGEDVDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDLTFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVNLKPQGGSNTRMADGDSPVQKTTQNGHHHHQQIPDFAYSPNPHNGSSGSERNNSEAEHKPKVVPRSEPRPKPAPSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAENAKRQRTIQVMDIHELPKSKPKNAFFGKNKGGGGGSQGRHW 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0627 356 MobiDBLite consensus disorder prediction 70 102 - -
Aed10g0627 356 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 211 IPR035441 -
Aed10g0627 356 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Aed10g0627 356 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 210 IPR035441 -
Aed10g0627 356 MobiDBLite consensus disorder prediction 238 252 - -
Aed10g0627 356 SMART TFS2_5 128 199 IPR003617 GO:0005634
Aed10g0627 356 Coils Coil 297 324 - -
Aed10g0627 356 MobiDBLite consensus disorder prediction 55 120 - -
Aed10g0627 356 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Aed10g0627 356 MobiDBLite consensus disorder prediction 204 231 - -
Aed10g0627 356 CDD TFIIS_I 125 198 - -
Aed10g0627 356 MobiDBLite consensus disorder prediction 329 356 - -
Aed10g0627 356 MobiDBLite consensus disorder prediction 204 297 - -
Aed10g0627 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 IPR044790 -
Aed10g0627 356 MobiDBLite consensus disorder prediction 253 267 - -
Aed10g0627 356 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0627 Aed-Chr10 5058677 5063097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed10g0627 Med26 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0627 - - gmx:100804034 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2092 5 23309110 23313004 Aed10g0627 10 5058677 5063097 PCT