Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0623 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTTGAGGAGCAAGATGACCGCGACATCAGCCGGAAGAAGAAGGAGAGCGGCGGCGACAAGGGCGAGAGGAGCTACAGAAAGCGCGCGGAGATAGACGAGGGAAACAACGAAGATAGGAAGAGCAAGAGGTCCAGGGGTGACGACGAGAATGGCTCCAAGAAGGCTAAAGATCGTGAAGAACGTGACAGGGAGCGCCGCAGGAGTAGCAGGGATAAAGATAGGGATAGAGATGTCGAGAGAAGTAGCAGAGACAGGGACAGGGATAGGGAGAAGGAGAGAGACAAAGAGAGGGATCGGAGGGATAGGGATAAAGATAAAGAGAAAGAAAAGAGGGAGAAGGAGAGAGACAGAGACAAAAGGGAGAAAGAACGGGAAGAGAGAGATAGGTCTCGGAGGAGTAGGAGTCATTCTCAGCGAGAAAAAGAAAGAGAACGAGAACGAGAACGGGACTTCGACAACAGAGATAACAGGAGATTTAGGGACAAGAAAGAGACAGCAGAGCCCGAGGCAGATCCAGAAAGAGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCATCAGAGAGAGATGCTTATGAATTCTTTTCAAAAGCTGGCAAGGTGAGGGATGTCCGTTTGATTATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACTAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTCAATATGACAGAAAGCCAATTGAGAGAGATTTTTGAGCCATTTGGTCCTGTGGAGGTTGTTCAACTGCCACTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATCCAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGTTGGACCGTTCTGGCATTGCTGCAAGCATTGGTCTGCCCGTTGTGAATGGGTCAGCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAATACCAGCAGTAGCACCAGCTGTCCTCACCCCAGTGATTGAACCTGTTGGAAACCCTACTGAGTGTTTACTGTTGAAGAATATGTTTGATCCAGACACTGAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAATGTTCCAAATATGGTCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACGGTGGAAGCAGCAAGTGGTGCTCAGCGTGCAATGCACACAAGGTGGTTTGCAGGCAGAACAATATCTGCTATCTTCATGATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAACGAGATACGCGTTACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTTCAGGAGAAAGGATCTAGTGAAATTGTTCTTAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCGTAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAATGAATTGGATAGGTCATCCACAGGATACCAACCTCCTCTTCCAGTTGATCAAAAGGCTCACCAAGGATGCGAGGAAGAGGGCATGGTCGTGGAAGGGGCAGGGGCAGGGGTAGAGGAATTTACAATGGGGGTATGGAATATGCGGATGGTTGGGATGGTGGACGTGGCTATGGTGGAAGAGGGCGTGGCCGTGGAAGGGGGCGCACTTTCTGGGGACGAGGACGAGGCTATGGTGCCCAGTATAGTGAATATGATGCTCCACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGAAGAGGCCGTGGAAGGGACTGGGGACCAGCTGCTTGATCTAGTGGTTGTTGCTTATCATGTATATGTCAAGTTAGAAGATGTTGCTTCTCTGTTTAGTTCTTTGTGA 2358 0.4682 MDFDEYDYLEKTVEEQDDRDISRKKKESGGDKGERSYRKRAEIDEGNNEDRKSKRSRGDDENGSKKAKDREERDRERRRSSRDKDRDRDVERSSRDRDRDREKERDKERDRRDRDKDKEKEKREKERDRDKREKEREERDRSRRSRSHSQREKERERERERDFDNRDNRRFRDKKETAEPEADPERDQRTVFAYQMPLKASERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDPTAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIAASIGLPVVNGSAPAQQAIMPIGNPGIIPAVAPAVLTPVIEPVGNPTECLLLKNMFDPDTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASGAQRAMHTRWFAGRTISAIFMMDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKNELDRSSTGYQPPLPVDQKAHQGCEEEGMVVEGAGAGVEEFTMGVWNMRMVGMVDVAMVEEGVAVEGGALSGDEDEAMVPSIVNMMLHLPHVAVDVEGEEAVEGTGDQLLDLVVVAYHVYVKLEDVASLFSSL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0623 785 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 541 - -
Aed10g0623 785 Pfam Alba 557 621 IPR002775 GO:0003676
Aed10g0623 785 Gene3D - 453 554 IPR012677 -
Aed10g0623 785 Gene3D - 113 275 IPR012677 -
Aed10g0623 785 CDD RRM1_RBM39_like 190 262 - -
Aed10g0623 785 TIGRFAM SF-CC1: splicing factor, CC1-like family 72 541 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aed10g0623 785 CDD RRM2_RBM23_RBM39 293 365 - -
Aed10g0623 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Aed10g0623 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 457 540 IPR000504 GO:0003723
Aed10g0623 785 MobiDBLite consensus disorder prediction 1 189 - -
Aed10g0623 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 363 IPR000504 GO:0003723
Aed10g0623 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 533 IPR000504 GO:0003723
Aed10g0623 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 258 IPR000504 GO:0003723
Aed10g0623 785 MobiDBLite consensus disorder prediction 12 188 - -
Aed10g0623 785 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 475 IPR029123 -
Aed10g0623 785 SUPERFAMILY RNA-binding domain, RBD 182 270 IPR035979 GO:0003676
Aed10g0623 785 Gene3D - 555 655 IPR036882 GO:0003676
Aed10g0623 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Aed10g0623 785 Coils Coil 115 140 - -
Aed10g0623 785 PANTHER CC1-LIKE SPLICING FACTOR 1 541 - -
Aed10g0623 785 SUPERFAMILY RNA-binding domain, RBD 290 368 IPR035979 GO:0003676
Aed10g0623 785 SMART rrm2_1 463 536 IPR003954 GO:0003676
Aed10g0623 785 SUPERFAMILY RNA-binding domain, RBD 454 536 IPR035979 GO:0003676
Aed10g0623 785 CDD RRM3_RBM39_like 456 538 - -
Aed10g0623 785 Gene3D - 287 382 IPR012677 -
Aed10g0623 785 SMART rrm1_1 292 365 IPR000504 GO:0003723
Aed10g0623 785 SMART rrm1_1 190 262 IPR000504 GO:0003723
Aed10g0623 785 SMART rrm1_1 458 536 IPR000504 GO:0003723
Aed10g0623 785 SUPERFAMILY AlbA-like 554 667 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0623 Aed-Chr10 5005191 5015949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0623 263 531 Eukaryotic Initiation Factors Gene Family AT4G34110 24.667 2.30e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0623 K13091 - gmx:100802446 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0623 10 5005191 5015949 Aed10g0623 10 5005191 5015949 ECH
Aed5g2085 5 23264079 23269947 Aed10g0623 10 5005191 5015949 PCT