Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0620 ATGAAGAACCCTGCATTGTCAAGGTTGTTACCTGGTATGAATAGGGAGAGAGAGATGTCTGTTATGGTCTCAGCTTTGACCCACGTCGTCTCCGGAGAGGTTCCAACCGTTGCTGTTGCAAGCATGTTTTCTTCTTCTTCTTCTTCTTCCTCTAATTCTCTCAAGAGAAGTAGATCAGAACATGATACATCTACATCATTCTCACGTATTCATGCACCTTCTTCATCATCATCATCTCCTGCTATGCCAACAAGTGCAGAATGTGGAAATAATGCTGTTTACGAATACAGAACAAGTACAGAAGAGAATGTGACGAGAAGGGACGAAGGAAGAAGAAAATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCATTCAAAGCGGCGAGAGTGTGGTTAGGAACATTCGACACGGCAGAGGCAGCAGCTAGAGCCTACGATCAAGCCGCGCTTCGGTTTAGAGGCAGCAAGGCAAAACTCAACTTCCCCGAGAATGTCACTCTCCGACAACAATTCACTACTCCAACTTCAATTACAACCTCAACCGACCCACTTCTTCTCCCTTCTCACCCTGCAACTGCAACTGCGACCAACAACAACAACGTTTTCGACTATTTTCAACTCTCGGGCTTCCCCACCAACCCTTATGATAATAGGATGTTTCTTACGCCTAATTCCAATACCATGGCTTCTCAATCTCATCATCATCATCATCATCATCTTCAATCTTCTTCATCGGTGCCACCAGCAACCACCACCTTGTCTTCTTCTTCTGCGTTTGTTTCTTCTATAACTTCTCCTCAGAACACTTCACTAATTTCTTCCTTGTATTCTGGCCAGTTACCACCATGGTCGGCCTCTGCTCATAGCTCTTCTTCTTCGGGATGA 909 0.462 MKNPALSRLLPGMNREREMSVMVSALTHVVSGEVPTVAVASMFSSSSSSSSNSLKRSRSEHDTSTSFSRIHAPSSSSSSPAMPTSAECGNNAVYEYRTSTEENVTRRDEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGSKAKLNFPENVTLRQQFTTPTSITTSTDPLLLPSHPATATATNNNNVFDYFQLSGFPTNPYDNRMFLTPNSNTMASQSHHHHHHHLQSSSSVPPATTTLSSSSAFVSSITSPQNTSLISSLYSGQLPPWSASAHSSSSSG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0620 302 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 PANTHER DNA-BINDING DOMAIN 6 286 IPR044808 GO:0003700|GO:0009873
Aed10g0620 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 6 286 - -
Aed10g0620 302 MobiDBLite consensus disorder prediction 66 87 - -
Aed10g0620 302 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 MobiDBLite consensus disorder prediction 231 259 - -
Aed10g0620 302 MobiDBLite consensus disorder prediction 44 87 - -
Aed10g0620 302 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Aed10g0620 302 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Aed10g0620 302 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0620 Aed-Chr10 4989792 4991451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0620 57 175 AP2-EREBP Transcription Factor Family AT5G61890 53.600 2.02e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed10g0620 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0620 - - gmx:100796247 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0620 10 4989792 4991451 Aed10g0620 10 4989792 4991451 ECH