Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0615 ATGGGTTGCATTTGCGGCAAGTTTTCTCCACCTCGCGAAGAGAGGCCGAAACGCCAAGTGAAGAGAGTTGCAAGCAACAAGGGTGGTTCGAGGACTCAGAGACAGAGAGTGAGTACTGTGAGTGTTAATAAGGTTGACGATGGTGCAGGTGCTGTAGAAGGAGAAAAGCCAAAACCAGTGGCTAAATATGAATTTGAGGAGGGGTGGCCAAAGTGGTTGCTCGATAATATCCCCGCTAATGTTTTGTCTAAAATTGTTCCCAAGAGCGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGAAAAGAGGACAGGGAAGATTGTTGCTTTGAAGAAGGTAAGGTTTGACACGTCGGATTCAGAGAGCATAAAGTTTATGGCAAGAGAGATCATGACACTGCAGAAGCTGGATCATCCCAATGTCATCAAACTTAGAGGACTCGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTGACTTCATGCACTCTGATCTCACCCGCATAATCTCCCGACCCGGCGACAAACTCACCGAACCACAGATAAAGTGCTATATGCAGCAGCTGCTTTGTGGGCTGCAGCACTGCCACGAGATGGGAATAATGCACCGAGATATAAAGCCTTCAAACTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTGAAGCTGAAAGGCCTCTTACAAATAGAGTGGTCACACTTTGGTATAGAGCTCCTGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGCTGCCTCTTGGCTGAGATGTTTGTTGGAACACCAATTATGCCTGGCAGAACAGAGGTTGAACAGATTCACATGATCTTCAAACTCTGTGGTTCTCCTCCAGAGGATTATTTAAAAAAACTGAAGCTAACAAAAAGCTACCGGGCTCCACAACATTATAAACCTAATTTCCAAGAAAACTTTCAGAAGTTTCCTTCCTCTTCCCTCAGTCTCTTGGCTACATTTCTTGATCTCAACCCTGCCCATCGTGCCTCTGCTTCCTCTGCTCTCCAAAGTGATTTCTTCAAGTGCAGTCCATTAGCATGTGACCCTTCAGCTTTGCCAGTAATCCACAAAGACGAGGATGAACGCTTACAAACTAAGAGAGGCAAAAGGCAAAGGGTTTCTAAAAGAGAGCAATCATCTCAAACAAGTAGAAGTGATGCTAGTCAGTCAGAAAAGAACCAAATTGCTAAACAACCCCGTGAAGATACAGAATCGTCAAAAGAGAAGAATATGGAACAACAGAAGCAAGGTCAAGAAACTGGGCATAGTGGTAGCACCACATCATCAGGTTCAAGATTATTGATGAACGAAGGGAGCACAAATGCATCATCTATGTCCCCAGTTTTTCTCTCCAGTGGCAGTGTCAGAGACGGAAAATCCCCCAAAACAGAGGGTCATCCTAATGCTCTTAAGAACATAAAGAACTATAGTGCTATCTTGCAACAAGCCTCTATGATTCATATCATCAACCGCAATAATAACGATTTTCCTCAGCTTCGCAAATCCTTCTCCGCGTTGGATTTTCGACTTGACCTAGACAAGCTATCAAACCTCCCTGCCTTACCTAATAATAAACAGATTTAA 1683 0.4355 MGCICGKFSPPREERPKRQVKRVASNKGGSRTQRQRVSTVSVNKVDDGAGAVEGEKPKPVAKYEFEEGWPKWLLDNIPANVLSKIVPKSADSYEKLAKIGRGTYSNVYKAREKRTGKIVALKKVRFDTSDSESIKFMAREIMTLQKLDHPNVIKLRGLATSRMQYSLYLVFDFMHSDLTRIISRPGDKLTEPQIKCYMQQLLCGLQHCHEMGIMHRDIKPSNLLIDRRGVLKIADFGLATSIEAERPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGTPIMPGRTEVEQIHMIFKLCGSPPEDYLKKLKLTKSYRAPQHYKPNFQENFQKFPSSSLSLLATFLDLNPAHRASASSALQSDFFKCSPLACDPSALPVIHKDEDERLQTKRGKRQRVSKREQSSQTSRSDASQSEKNQIAKQPREDTESSKEKNMEQQKQGQETGHSGSTTSSGSRLLMNEGSTNASSMSPVFLSSGSVRDGKSPKTEGHPNALKNIKNYSAILQQASMIHIINRNNNDFPQLRKSFSALDFRLDLDKLSNLPALPNNKQI 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0615 560 CDD STKc_CDK9_like 93 373 - -
Aed10g0615 560 MobiDBLite consensus disorder prediction 428 448 - -
Aed10g0615 560 MobiDBLite consensus disorder prediction 25 42 - -
Aed10g0615 560 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Aed10g0615 560 MobiDBLite consensus disorder prediction 413 427 - -
Aed10g0615 560 Gene3D Phosphorylase Kinase; domain 1 81 175 - -
Aed10g0615 560 ProSiteProfiles Protein kinase domain profile. 93 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0615 560 PANTHER CYCLIN-DEPENDENT KINASE 50 517 - -
Aed10g0615 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Aed10g0615 560 SMART serkin_6 93 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0615 560 MobiDBLite consensus disorder prediction 1 53 - -
Aed10g0615 560 Pfam Protein kinase domain 93 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0615 560 PANTHER CELL DIVISION PROTEIN KINASE 50 517 - -
Aed10g0615 560 MobiDBLite consensus disorder prediction 449 491 - -
Aed10g0615 560 SUPERFAMILY Protein kinase-like (PK-like) 87 376 IPR011009 -
Aed10g0615 560 MobiDBLite consensus disorder prediction 391 502 - -
Aed10g0615 560 Gene3D Transferase(Phosphotransferase) domain 1 176 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0615 Aed-Chr10 4953293 4956194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0615 88 417 Core Cell Cycle Gene Families AT5G10270 45.429 6.75e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed10g0615 Pkinase 9.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0615 K08819 - gmx:100782603 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0615 10 4953293 4956194 Aed10g0615 10 4953293 4956194 ECH