Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0606 ATGGACTTGGCCGCGAAGCTTTATCACTTAGACCTCACCGGCGCGGTCATTTTGGACGCACGAAAGCCCTCCGCACTGCGCCACCTTCCGCCACGTGTCCTCACCACCAGAACCAACACCAGCACAAATTTAATTTACACCAAACGGTTCCCGGGTCCACTGAGGCCCAATTCCGCCTCATCATCGGGCCTGTCCACGATAACCGTGGAGGACGACATTGAGTCGCTGTTCTCCGAGACGAATTCGGAGGATGAGCGGCGCGTGAGGAAGCAACCGAGCGGAGGCGCGTCTGGCGTGTCGTCCGGGGTGAAGCTGGAGAACGTGGGTAAGGCGTACAAGGGCGTGACGGTGCTGAAGGACGTGAGCTGGGAAGTGAAGAAGGGGGAGAAGGTGGGCCTGGTTGGCGTCAACGGCGCCGGGAAGACGACGCAGATGAGGATAATCGCGGGCCTGGAGGAGCCCGATTTCGGGAACGTGGTGAAGGCGAAACCCAACATGAAAATCGCGTTTCTGAACCAGGAGTTCGAGGTGTCGCTGAGCAGGACGGTGAGGGAGGAGTTCATGAGCGCCTTCAAGGAGGAAATGGAGGTCGCCGGGAAGCTGGAGAGGGTGCAGAAGGCGCTCGAGGGCGCTGTCAATGATTTGGAGCTCATGGGGAGGCTCTTGGATGAGTTTGATTTGCTTCAGAGGAGGGCTCAGTCTGTGGACTTGGACGAGGTTGATGCTAAGATTAGTAAGTTGGTGCCTGAGCTCGGTTTCGCTCCCGAGGATTCTGATAGGTTGGAGCCTGATTTGTTGCTGTTAGATGAGCCTACGAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGACTATCTTACTCGGCAGGATGTGCCTATGGTTATCATTTCCCATGACCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGCGTGTCCAGGACGTTTGAGGGAAATTATTCTGAGTATAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTGGAGAAGCCATTTGAACGAAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAGCAATTAAGAACTTGGAATTCGGATTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATTTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAAAAAACAGTGCTCGAGACAGTAGAGGAAGTTGCAGAAGACTGGAGGATTGATGATATTAAAGGGCTTCTTGGGCGTTGTAATTTTAAAGCTGATATGCTTGACCGGAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTATGCTTGTGTTGGACGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAAATGAATACCAGGGCACTGTTATCACAGTATCTCACGATCGATACTTTATAAAGCAAATAGTTAATAGAGTGATAGAAATTAATGATGGCACTATACAGGATTATGCTGGTGATTACAATTATTATTTGGAGAAGAATCTTGATGCCTTGGAAAGAGAACTTGAACGCGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCAAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAACAGAAGATTCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGGCGTGAAAAATGCCAAGAGATGGAATTGA 1896 0.481 MDLAAKLYHLDLTGAVILDARKPSALRHLPPRVLTTRTNTSTNLIYTKRFPGPLRPNSASSSGLSTITVEDDIESLFSETNSEDERRVRKQPSGGASGVSSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAGKLERVQKALEGAVNDLELMGRLLDEFDLLQRRAQSVDLDEVDAKISKLVPELGFAPEDSDRLEPDLLLLDEPTNHLDLDTIEWLEDYLTRQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSEYKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAIKNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNLLPNYFEQNQAEALDLEKTVLETVEEVAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEINDGTIQDYAGDYNYYLEKNLDALERELEREAELDSKAPKVKAKSKMSKAEKEARKKQKIQAFQAAKQKSKGVKNAKRWN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0606 631 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 328 621 - -
Aed10g0606 631 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 43 330 - -
Aed10g0606 631 SMART AAA_5 388 556 IPR003593 -
Aed10g0606 631 SMART AAA_5 127 322 IPR003593 -
Aed10g0606 631 Pfam ABC transporter 118 204 IPR003439 GO:0005524
Aed10g0606 631 Coils Coil 565 585 - -
Aed10g0606 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 579 IPR003439 GO:0005524
Aed10g0606 631 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524
Aed10g0606 631 MobiDBLite consensus disorder prediction 585 631 - -
Aed10g0606 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 326 IPR027417 -
Aed10g0606 631 CDD ABCF_EF-3 366 556 - -
Aed10g0606 631 MobiDBLite consensus disorder prediction 585 611 - -
Aed10g0606 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 569 IPR027417 -
Aed10g0606 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 103 341 IPR003439 GO:0005524
Aed10g0606 631 MobiDBLite consensus disorder prediction 78 102 - -
Aed10g0606 631 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 328 621 - -
Aed10g0606 631 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 43 330 - -
Aed10g0606 631 Coils Coil 591 611 - -
Aed10g0606 631 CDD ABCF_EF-3 104 313 - -
Aed10g0606 631 Gene3D - 335 590 IPR027417 -
Aed10g0606 631 Pfam ABC transporter 380 511 IPR003439 GO:0005524
Aed10g0606 631 Gene3D - 97 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0606 Aed-Chr10 4847743 4852203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0606 361 575 Calmodulin-binding Proteins AT2G36910 26.050 4.24e-14 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0606 10 4847743 4852203 Aed10g0606 10 4847743 4852203 ECH