Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0588 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATGTTGTTTCATCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCAGGAACCCTAAATACTATCACTCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCTCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTCGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTAGCAGAATGTCAAAGAGCTGATGCTGCAAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCAGTGTATGGATGCATGGGTGCAATTTCTGGTTTGCAACATCAAGTACAATCTTTACAAGCTGAACTTAATGCAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTAACATGAACATGAACATGAACATGATACCCTCTTCTCATCATGTTCCAATGCTTCCTTCAGCTGGGGCTGCAGTTTCAATTGCAGCTCCGCCGCCGCCACCTCCTCCACCACCACCACCACCACCTCCTCTTCCTCTAACTTCTTCCTCTCCTTCCATGTACATCCAACAGAGGGATCCCATCAGTTACACCACAATTTCAACTGATAATATCTCCTATTTTGGTTAA 681 0.4405 MSRERERFDEIGKKIKREGDVVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECQRADAANSLVYEANVRLRDPVYGCMGAISGLQHQVQSLQAELNAVRAEILKYKLREANMNMNMNMIPSSHHVPMLPSAGAAVSIAAPPPPPPPPPPPPPPLPLTSSSPSMYIQQRDPISYTTISTDNISYFG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0588 226 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Aed10g0588 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 225 - -
Aed10g0588 226 PANTHER LOB DOMAIN PROTEIN 20 225 - -
Aed10g0588 226 Coils Coil 122 149 - -
Aed10g0588 226 MobiDBLite consensus disorder prediction 177 199 - -
Aed10g0588 226 PRINTS Wilm's tumour protein signature 179 193 - -
Aed10g0588 226 PRINTS Wilm's tumour protein signature 125 141 - -
Aed10g0588 226 MobiDBLite consensus disorder prediction 177 203 - -
Aed10g0588 226 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0588 Aed-Chr10 4734914 4738013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0588 1 151 AS2 family AT2G30340 69.375 1.15e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed10g0588 LOB 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0588 - - gmx:100786324 350.517