Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0566 ATGTCCTCCGAAGACATTACTCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAATTCCCCTCTGGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCAACCCCCAGCAGCAGCGCCGGGTCGGGGACCCGGGTCCAAAAACCCGAGACCTCGGCGCTTTCATCGACCGTGACCACCGCTTCTTCGCTGCCCAGAACCCCGACTTCCGCCGCTACGACGACTGCTCCGACCGCCGCAATTGGACCGCCAACGGCAGCGCCGCCACTCCCAGCGAGGACGACGATTCAGATGAAGACGACGAAGATGACGACGATGACGAGGACGACGAAGATGACGCCGATGTAGGAGGACTCGTCGGTGACGGAAGCAAAAGAGAAATTAACAATCACAACAACAGTAGCGGTAATTTACCTGCTGTTGCAAACGGGAAAGCCCACTCTTACGTTTCTGGAAGAGAGTTATTGGGGAAGGATGGTGGAGACATTGGGCAATTGGTGCATAGCAATGTGAGTGGTGGCGATGAGGATCACCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTCACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGCGGCGAAGGGGCTTCTGGTCACAAAGTTATGGTGGATGACGGTGGTTGTGGGTTTAGTGGGAGGAAGGATGCTATGTATTCCAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTCTCAGATCCTGTTACGAGTGCTCTTATGGATGATGCTATGATATTACCGTGTGGACATTCATTCGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACATCTGAGGAATCAATATCTCCAAACTTATCACTTCGGGCTGCTGTGCTTGCATATCGTCGTGAAGAGGAGTCACAATTTTACCGATCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGTGTTTATCTCCGTTCCCGTACCATGA 1005 0.5204 MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPNPQQQRRVGDPGPKTRDLGAFIDRDHRFFAAQNPDFRRYDDCSDRRNWTANGSAATPSEDDDSDEDDEDDDDDEDDEDDADVGGLVGDGSKREINNHNNSSGNLPAVANGKAHSYVSGRELLGKDGGDIGQLVHSNVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLQGGEGASGHKVMVDDGGCGFSGRKDAMYSSESGESLRAILSDPVTSALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISPNLSLRAAVLAYRREEESQFYRSPKRRRERFDQVFISVPVP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0566 334 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 53 326 - -
Aed10g0566 334 MobiDBLite consensus disorder prediction 68 142 - -
Aed10g0566 334 MobiDBLite consensus disorder prediction 1 20 - -
Aed10g0566 334 SUPERFAMILY RING/U-box 239 312 - -
Aed10g0566 334 MobiDBLite consensus disorder prediction 126 141 - -
Aed10g0566 334 ProSiteProfiles U-box domain profile. 240 312 IPR003613 GO:0004842|GO:0016567
Aed10g0566 334 MobiDBLite consensus disorder prediction 92 117 - -
Aed10g0566 334 Pfam U-box domain 246 310 IPR003613 GO:0004842|GO:0016567
Aed10g0566 334 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 53 326 - -
Aed10g0566 334 MobiDBLite consensus disorder prediction 25 53 - -
Aed10g0566 334 MobiDBLite consensus disorder prediction 156 190 - -
Aed10g0566 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0566 Aed-Chr10 4548273 4553687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0566 186 326 Plant U-box Gene Family AT5G05230 54.795 3.00e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0566 - - gmx:100791099 516.153