Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0565 ATGCGAGCGTTATTATTTTCAAGCATGAGAGTTTTGCTTTATCTTGTGTGGTTGTTGGAGCTGGTTTGTTTGGCGGTGACCGCTGTGAACCCTTCTCTGAACGACGACGTTTTGGGGTTGATTGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTCGTGTCTTGGAGCGAGGACGATGAGAGTGCGTGTGGGGGTAGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAATAGAGTGGTGGAGGTTAACCTTGATGGGTTTTCCCTTTCTGGGAGAATAGGCAGAGGCTTGCAAAGGTTGCAGTTTCTAAGAAAGCTTTCTCTGGCGAATAATAACCTCACTGGGGGAATAAACCCCAACATTGCTCGAATAGATAATCTTAGGGTCATTGACTTGAGTGGGAATAGTCTCTCAGGGGAGGTGTCTGATGATGTTTTCCGACAATGTGGGTCTCTCAGAACTGTTTCCTTGGCCGGGAACAGGTTTTCTGGGAGCATTCCCTCAACTTTGGGGGCATGTTCTGCTCTTGCTGCTATTGACCTTTCTAACAACCAGTTTTCTGGTTCTGTTCCCTCTGGGGTTTGGTCTTTGAGTGCTCTCAGGTCTCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAGGGGGTTGAGGCTATGAAGAATTTGAGGAGTGTTAGCGTGGCGAGGAATCGGTTGACCGGGAATGTTCCTTATGGGTTTGGGAGTTGTTTGCTTTTGAGGTCCATTGATTTAGGGGATAATTCTTTCTCTGGGAGCGTTCCCGGTGATTTTAAGGAACTTACATTGTGTGGTTACCTTAGTTTGCGTGGGAATGCTTTCTCTGGAGAGGTTCCTCAGTGGATTGGGGAGATGAGAGGGCTTGAGACGGTGGACCTTTCGAACAATGGGTTAACCGGTCAGGTGCCGAGCTCTATTGGAAATCTTCAGTCGTTGAAGATGTTTAATATTTCTGGAAATGGTCTCACTGGTAGTCTGCCTGAGTCTATGGCAAACTGTACAAAACTTTCGGTGTTGGATGTCAGCCGGAATTCGATGTCGGGATGGCTTCCGTTGTGGGTCTTCAAGGCGGATTCGGAAAAGGTTTTGGTGTCACAAAATGTACAGAGTGGGAGCAAGAAAAGCCCTTTGTTTGCCTTGCCTGAAGTCGCTGTTCAAAGTCTTCAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACGTCTGCTGTTGGAAGTTTAAGCAGCTTGCAGGTTTTGAATTTAGCAAATAACTCTCTTAGAGGTCCTATACCAGCTGCAGTTGGTGACTTGAAAACATGTTCTAGTCTTGATTTGAGCTACAATAAGTTAAATGGAAGCATACCTTGGGAAATAAGTGGAGCCGTGTCCTTGAAAAAACTGGTACTGGAAAAGAACTTCCTAATTGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACAAATTTGATTCTATCCCAGAACAAGCTGAGTGGCCCAATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAAATGTGGACTTATCGTTTAACAGTCTTACTGGAAACCTTCCTAAGCAATTGGCCAACCTTGGCAATCTTGTTACCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACTATTTCGCCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACACTGGCCCGGGTTCAGTGCCTCCCAATCTGGGTCACAAAAGAATTATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGCCCATCTACATCTCGTGATCCAGCGGCCCTCACATTTTCTGCAGGGGACGAATTCAGCCGTTCCCCAACTACAGATGCTAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGTTCTGGCGCGCATGCTTTGCTCAATAAGGATTGTGAGCTTGGGCGTGGAGGATTCGGAGCAGTGTACCAAACGGTTCTTAGAGATGGACATTCTGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAACTAGGAAAAATCAGACACCAAAACCTCGTGGAACTAGAGGGTTATTATTGGACTCCATCGCTGCAGCTCCTCATATACGAGTTTGTCTCTGGCGGTAGTCTGTATAAGCATCTCCACGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTTGGTACAGCAAAGGCACTGGCACACTTGCACTATTCCAGCATTATTCACTATAACATCAAGTCAACCAATGTCCTTCTTGATAGTTATGGCGAACCAAAAGTAGGGGACTTTGGCCTAGCAAGGCTGTTGCCAATGCTCGATCGATACGTTCTGAGCAGCAAAATTCAGAGCGCACTAGGGTACATGGCACCAGAGTTTGCCTGCAAAACGGTGAAAATCACCGAGAAATGCGACGTATACGGGTTTGGTGTGTTGGTTTTGGAGATCGTCACAGGGAAGAGGCCGGTTGAGTACATGGAGGATGACGTGGTGGTACTTTGCGACATGGTGAGAGGGGCTTTGGAAGAAGGCAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCCATTCCTGTGATGAAGCTTGGCTTGATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATTTTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2940 0.4619 MRALLFSSMRVLLYLVWLLELVCLAVTAVNPSLNDDVLGLIVFKADIRDPKGKLVSWSEDDESACGGSWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSDDVFRQCGSLRTVSLAGNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRSVSVARNRLTGNVPYGFGSCLLLRSIDLGDNSFSGSVPGDFKELTLCGYLSLRGNAFSGEVPQWIGEMRGLETVDLSNNGLTGQVPSSIGNLQSLKMFNISGNGLTGSLPESMANCTKLSVLDVSRNSMSGWLPLWVFKADSEKVLVSQNVQSGSKKSPLFALPEVAVQSLQVLDLSHNAFSGEITSAVGSLSSLQVLNLANNSLRGPIPAAVGDLKTCSSLDLSYNKLNGSIPWEISGAVSLKKLVLEKNFLIGKIPTSIENCSLLTNLILSQNKLSGPIPAAVAKLTNLQNVDLSFNSLTGNLPKQLANLGNLVTFNLSHNNLQGELPAGGFFNTISPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDTGPGSVPPNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRPSTSRDPAALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEFVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHYSSIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0565 979 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 12 977 - -
Aed10g0565 979 Gene3D Phosphorylase Kinase; domain 1 690 772 - -
Aed10g0565 979 SUPERFAMILY Protein kinase-like (PK-like) 699 969 IPR011009 -
Aed10g0565 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 977 - -
Aed10g0565 979 Pfam Leucine Rich Repeat 469 491 IPR001611 GO:0005515
Aed10g0565 979 Gene3D Transferase(Phosphotransferase) domain 1 773 977 - -
Aed10g0565 979 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Aed10g0565 979 Gene3D Ribonuclease Inhibitor 34 314 IPR032675 -
Aed10g0565 979 ProSiteProfiles Protein kinase domain profile. 696 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0565 979 SUPERFAMILY L domain-like 57 363 - -
Aed10g0565 979 SMART LRR_typ_2 295 319 IPR003591 -
Aed10g0565 979 SMART LRR_typ_2 419 443 IPR003591 -
Aed10g0565 979 SMART LRR_typ_2 126 150 IPR003591 -
Aed10g0565 979 SMART LRR_typ_2 539 563 IPR003591 -
Aed10g0565 979 SMART LRR_typ_2 199 223 IPR003591 -
Aed10g0565 979 SMART LRR_typ_2 515 538 IPR003591 -
Aed10g0565 979 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
Aed10g0565 979 SUPERFAMILY L domain-like 264 612 - -
Aed10g0565 979 CDD STKc_IRAK 702 968 - -
Aed10g0565 979 Gene3D Ribonuclease Inhibitor 315 589 IPR032675 -
Aed10g0565 979 Pfam Protein tyrosine and serine/threonine kinase 698 964 IPR001245 GO:0004672|GO:0006468
Aed10g0565 979 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Aed10g0565 979 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Aed10g0565 979 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0565 Aed-Chr10 4536951 4542150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0565 10 979 Receptor kinase-like Gene Family AT3G56370 68.480 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Aed10g0565 PK_Tyr_Ser-Thr 5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0565 - - gmx:100791629 1787.31