Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0559 ATGTGTTATGTTGAGACTTCTTCTTCTCTTTCTCTTTCTCTTACTCTGACGACACGACCGCAGCCGCAGCAAGAGACAACAACAACAAGAACGAGGAGAGAGTGGTTGGGTTGTTCGATGGAGAAGGACTTGGTGGAATTGTACGAGGCCGCCAAGAAGGCGGCGGACGCGGCCATCTCCGGCGACGCCGAACACGAAGAGAACCGTTGCATCGATGCGCTTGAGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTTGTTAACACCCAGGTGGGCAAACATCTTAAAATTCTGACAAAGCACCCAAGGCAGAAAATTAAGGCCTTTGCTATTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACTAGCAAAAATAAAAACGGGGGCTCTGATAGTAAGGTTGAGTCGGCTAATGGGGAGAGATCTAAACCTGGGAAAATGCAAAAGAGTTCTTCAATGAAGGTTGAAAAAGGTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTATGACAAAGTCAAGCTCAGAAAGTATGAAAAAGGTACAAAATGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGCCAGTTTCTGGAGCAAAGAGAATGTCATCCAGTTCTGCCAACGCTACCCTGAAGTTAAAAACTATGATTAAATCTAATGATGCAACACGAGACAAAATAAGGGAAATTCTCCATGAAGCTTTATCCAAGGTCGCTGGAGAGGCTGATGAAGATCTCATAGATGTAATCAATGATGCTGATCCTATTCGTGTTGCTGTGACAGTGGAGTCTGTATTGTTTGAAAAATGGGGTGCTTCAAATGGGTCACAGAAGGTCAAGTACAGGTCCTTAATGTTTAACCTTAAGGATTCGAATAACCCTGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCAGAGCAACTGATCAACATGAGCACATCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAATATCAGAAAATCACAGAGAAGGCTTTGTTTGATTGTGAGCGTGGCGGCCAACCAAAAGCTACGACGGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTTGTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1209 0.4342 MCYVETSSSLSLSLTLTTRPQPQQETTTTRTRREWLGCSMEKDLVELYEAAKKAADAAISGDAEHEENRCIDALEQLKKFPVNYKILVNTQVGKHLKILTKHPRQKIKAFAIDLIEIWKGIIIKETSKNKNGGSDSKVESANGERSKPGKMQKSSSMKVEKGETVKVEKIDRNGMTKSSSESMKKVQNDVKNEKTDRAASVKVEKPVSGAKRMSSSSANATLKLKTMIKSNDATRDKIREILHEALSKVAGEADEDLIDVINDADPIRVAVTVESVLFEKWGASNGSQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTSEMASEQRKQEYQKITEKALFDCERGGQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCCVCNNRWKFC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0559 402 ProSiteProfiles Zinc finger TFIIS-type profile. 360 400 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aed10g0559 402 PIRSF TFIIS 40 402 IPR035100 -
Aed10g0559 402 SMART TFS2_5 47 124 IPR003617 GO:0005634
Aed10g0559 402 Pfam TFIIS helical bundle-like domain 73 122 IPR017923 -
Aed10g0559 402 SUPERFAMILY Elongation factor TFIIS domain 2 223 332 IPR036575 GO:0006351
Aed10g0559 402 MobiDBLite consensus disorder prediction 184 201 - -
Aed10g0559 402 MobiDBLite consensus disorder prediction 128 216 - -
Aed10g0559 402 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 40 402 - -
Aed10g0559 402 SUPERFAMILY Zinc beta-ribbon 341 400 - -
Aed10g0559 402 SMART Cys4_2 362 401 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aed10g0559 402 Pfam Transcription factor S-II (TFIIS) 362 400 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aed10g0559 402 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 40 402 - -
Aed10g0559 402 Gene3D - 331 402 - -
Aed10g0559 402 Pfam Transcription factor S-II (TFIIS), central domain 231 348 IPR003618 GO:0006351
Aed10g0559 402 ProSiteProfiles TFIIS N-terminal domain profile. 46 125 IPR017923 -
Aed10g0559 402 TIGRFAM TFSII: transcription elongation factor S-II 51 402 IPR006289 GO:0003676|GO:0005634|GO:0006368
Aed10g0559 402 SMART mid_6 232 340 IPR003618 GO:0006351
Aed10g0559 402 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 36 137 IPR035441 -
Aed10g0559 402 CDD Zn-ribbon_TFIIS 355 401 - -
Aed10g0559 402 MobiDBLite consensus disorder prediction 154 175 - -
Aed10g0559 402 Gene3D - 210 330 IPR036575 GO:0006351
Aed10g0559 402 ProSitePatterns Zinc finger TFIIS-type signature. 364 399 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aed10g0559 402 CDD TFIIS_I 62 122 - -
Aed10g0559 402 ProSiteProfiles TFIIS central domain profile. 234 357 IPR003618 GO:0006351
Aed10g0559 402 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 63 137 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0559 Aed-Chr10 4481993 4486477 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aed10g0559 TFIIS_M 4.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0559 K03145 - gmx:100811982 655.981