Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0554 ATGGCCATGAAGTTACAGTTCTCTATTGTTGCACTTGTTCTATTAGGCCTCACACTATCTCTTGTAGCTGACTTGAACTCTGACCAACAAGCTCTCTTGGAGTTTGCTTCAAGTGTCCCACATGCTCCAAGGCTCAACTGGAAGAATGACTCTGCTTCAATTTGCACCTCATGGATTGGTGTGGCATGCAACTCGAACAGCACACGTGTCACAGGCCTCCACCTTCCAGGAATGGGATTCACAGGAACCATTCCAGAGAACACCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCAAATGGCCTTAGTGGAAATCTTCCTTCTAACATCCTCTCTATTCCTTCACTCCAATTTGCATACCTTCAGCACAATAGCTTCTCTGGCCTAATTCCTTCTCCTGTGTCCCCTAAACTCATGGCATTGGACATTTCCTTTAACTCCTTCTCTGGAAGCATTCCACCTGCTTTTCAGAACCTTAGAAGACTCACTTGGTTATATCTCCAAAACAATTCCATATCTGGAGCTATTCCTGATTTCAACCTTCCAAGTCTCAAGCACTTGAACTTGAGCTTTAATAACTTGAATGGTTCAATTCCAGATTCCATAAAGACATTCCCTTTTACCTCTTTTGTTGGAAACTCTCTCTTATGTGGAACACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTTCCACTGATTACGAGCCACTAACTCCACCAACCACACAAAACCAAAATGCTACAAAACATAAGAAAAACTTTGGCCTAGCTACTATACTTGCTCTGGTCATTGGTGTCATTGCATTCATCTCTTTAATAGTTGTGGTTATCTGTGTGTTCTGTTTGAAGAAGGAGAAAAACAGTAAAAGCAGCAGTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGAAAGCCTGAGGTTTCAAAGAGTTTTGGGAGTGGAGTTCAAGGGGCTGAAAAGAACAAGCTGTTTTTCTTTGAAGGTTCTTCTCATAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATACAAGGCTGTTTTGGAAGAGGGAACCACAGTGGTAGTTAAGAGGCTGAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCAGTTGGAGATTGTGGGGAGAATTGGAAGCCACCCCAATGTGATGCCCCTAAGGGCTTATTACTATTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCCAGGTGGCAACTTGTTTTTCTTGTTGCATGGAAACAGGGGAGCAGCTGGAAGAACCCCACTAGACTGGGACTCAAGAGTGAAAATTCTGGTAGGAGCGGCCAAGGGAATAGCTTTCATCCACACAGAGGGTGGTCCAAAGTTCACACACGGCAACATAAAATCAACCAACGTGCTCATAACCGAAGAGCTAGACAGCTGCATTTCCGATGTGGGACTTCCACCACTGATGAACACACCAGCAACCATGTCAAGAGCCAATGGCTACAGAGCCCCAGAAGTGACAGACTCAAGGAAGATAACACACAAGTCTGACGTGTACAGCTTTGGTGTGCTTCTGCTTGAAATGCTTACAGGGAAGACCCCTCTGAGGTACCCTGGCTATGAGGAGGTGGTGGATCTTCCAAGGTGGGTGAGGTCTGTTGTGAGAGAGGAGTGGACTGCTGAAGTGTTCGATGAGGAGCTTCTGAGAGGGAGTTATGTGGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTTGCATGTGTGGCTAAGGGGGCTGATAATAGGCCTGGAATGGATCATGTTGTTAGAATGTTGGAGGAAATTAAGCACCCTCAGTTGTTCAAGAACAGGGCTTCCTCTGAGTCTGAGTCCAATGTGCAGACACCAACACCGTGA 1926 0.4533 MAMKLQFSIVALVLLGLTLSLVADLNSDQQALLEFASSVPHAPRLNWKNDSASICTSWIGVACNSNSTRVTGLHLPGMGFTGTIPENTIGKLDALRVLSLHSNGLSGNLPSNILSIPSLQFAYLQHNSFSGLIPSPVSPKLMALDISFNSFSGSIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSFNNLNGSIPDSIKTFPFTSFVGNSLLCGTPLNHCSTISPSPSPSTDYEPLTPPTTQNQNATKHKKNFGLATILALVIGVIAFISLIVVVICVFCLKKEKNSKSSSGILKGKASCAGKPEVSKSFGSGVQGAEKNKLFFFEGSSHSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRIGSHPNVMPLRAYYYSKDEKLLVYNYMPGGNLFFLLHGNRGAAGRTPLDWDSRVKILVGAAKGIAFIHTEGGPKFTHGNIKSTNVLITEELDSCISDVGLPPLMNTPATMSRANGYRAPEVTDSRKITHKSDVYSFGVLLLEMLTGKTPLRYPGYEEVVDLPRWVRSVVREEWTAEVFDEELLRGSYVEEEMVQMLQIALACVAKGADNRPGMDHVVRMLEEIKHPQLFKNRASSESESNVQTPTP 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0554 641 PANTHER RECEPTOR-LIKE KINASE 7 641 - -
Aed10g0554 641 ProSitePatterns Protein kinases ATP-binding region signature. 352 383 IPR017441 GO:0005524
Aed10g0554 641 CDD STKc_IRAK 352 618 - -
Aed10g0554 641 SUPERFAMILY Protein kinase-like (PK-like) 350 619 IPR011009 -
Aed10g0554 641 SUPERFAMILY L domain-like 32 224 - -
Aed10g0554 641 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Aed10g0554 641 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Aed10g0554 641 Pfam Protein kinase domain 350 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0554 641 PANTHER OS05G0588300 PROTEIN 7 641 - -
Aed10g0554 641 MobiDBLite consensus disorder prediction 230 252 - -
Aed10g0554 641 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Aed10g0554 641 Gene3D Phosphorylase Kinase; domain 1 313 421 - -
Aed10g0554 641 Gene3D Transferase(Phosphotransferase) domain 1 422 638 - -
Aed10g0554 641 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Aed10g0554 641 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0554 Aed-Chr10 4438068 4443412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0554 22 637 Receptor kinase-like Gene Family AT5G58300 60.032 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed10g0554 Pkinase 8.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0554 - - gmx:100818444 1126.69