Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0552 ATGTTTGACCATGGAGAGAGATTCTTGTTCTTGAGCCGCAAGGTCCTTCTTTCAGTCCGCTGCAAGGACAATAACAGTCATAATGCACAAGAGGCCCTTCGTCGTGCTGAGTTCAAGTTCCCTGGTCGTCAGAAGATCATTGTTAGCAGGAAATGGGGTTTTACCAAGTATAGCCGTGCTGATTATCTCAAGTACAAGTCGGATAACAGGATTGTGCCTGATGGTGTGAATGCAAAGCTATTTTCAGCTTATCTAATTTACAAACTCCTTCTTGCTGTCTTGCAGCTTCTTGGGTGCCATGGACCACTGGCAAACCGTGAACCCGGACAGGCTTTCTTGGATAGCGCTACTGCTACTGCTTAG 363 0.4656 MFDHGERFLFLSRKVLLSVRCKDNNSHNAQEALRRAEFKFPGRQKIIVSRKWGFTKYSRADYLKYKSDNRIVPDGVNAKLFSAYLIYKLLLAVLQLLGCHGPLANREPGQAFLDSATATA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0552 120 Gene3D - 60 83 - -
Aed10g0552 120 PANTHER 60S RIBOSOMAL PROTEIN L10 14 83 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aed10g0552 120 PANTHER 60S RIBOSOMAL PROTEIN L10 95 115 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aed10g0552 120 Gene3D Ribosomal protein L10e/L16 10 59 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aed10g0552 120 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 14 83 - -
Aed10g0552 120 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 95 115 - -
Aed10g0552 120 SUPERFAMILY Ribosomal protein L16p/L10e 14 57 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0552 Aed-Chr10 4429531 4431419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0552 14 117 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 63.462 5.64e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0552 K02866 - gmx:100499685 162.925