Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0551 ATGGATTCGTCGTCGTCGTCGTCTTCTGGAAGCGATGCCGGTGGTGCTGGTGGTGGCGGCTCTGTCACTTGGTTCGGGATGACTTTCCCGTTCCGTTCTCCGCTCTCTCTCGTGATGGATTACTGCGCGCGCGAGGATTCGGCGGAGCCTGTGATTATTATTCCCCGCACGCGCCCTCGGTTTCAGCCGCAGGCCGCCGAGTCCGCAGCCTCTGCCTCGGCCTCTGATTCCGACGATAATGCGTGCAACGGCGCTGAGGAGGTTGCGATACGCATAATCGGGGCCGGCGAGCAGGAGAGCGGTTCCTCGCCGTCGTCGTCGAGGAGCCGGGGCGGCGGGGAGCCAGGCTGCGAGGAGGCGGTGGTTGGGAGGAGCGGGATGCTGTCGTCGGAGACTCGCCGGCGAATGGCGGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGGATTGATACATTGATGCGGCAAGCAGTGATGGCTTTGAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGTCCAATGCTTCGTTTCTTCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAGTGGAACAGGTGAATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACATGCCCATTATGCAGGGCGTTGGTAAAACCAGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTATTTTAA 828 0.5459 MDSSSSSSSGSDAGGAGGGGSVTWFGMTFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQPQAAESAASASASDSDDNACNGAEEVAIRIIGAGEQESGSSPSSSRSRGGGEPGCEEAVVGRSGMLSSETRRRMAEERVPLVSLDDGIDTLMRQAVMALKCLLLIYYKNGRGHNFRRQVQCFVSSLKALSKKEVHYGVYATVEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0551 275 MobiDBLite consensus disorder prediction 64 80 - -
Aed10g0551 275 ProSitePatterns Zinc finger RING-type signature. 229 238 IPR017907 -
Aed10g0551 275 SUPERFAMILY RING/U-box 204 257 - -
Aed10g0551 275 Pfam Zinc finger, C3HC4 type (RING finger) 212 255 - -
Aed10g0551 275 MobiDBLite consensus disorder prediction 54 81 - -
Aed10g0551 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 262 IPR013083 -
Aed10g0551 275 ProSiteProfiles Zinc finger RING-type profile. 214 252 IPR001841 -
Aed10g0551 275 MobiDBLite consensus disorder prediction 94 134 - -
Aed10g0551 275 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 151 182 IPR044235 GO:0061630|GO:1904294
Aed10g0551 275 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 180 275 IPR044235 GO:0061630|GO:1904294
Aed10g0551 275 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 150 IPR044235 GO:0061630|GO:1904294
Aed10g0551 275 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 151 182 - -
Aed10g0551 275 CDD RING-HC_RNFT1_like 213 252 - -
Aed10g0551 275 SMART ring_2 214 251 IPR001841 -
Aed10g0551 275 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 180 275 - -
Aed10g0551 275 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0551 151 275 C3H Transcription Factor Family AT5G01960 53.333 4.06e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0551 - K22379 gmx:100784614 207.223